RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 NSDHLQ15738 373 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 CTU2Q2VPK5 515 aaKnown RBP6.96□□□□□ -1.3
VPS39-204ENST00000561818 ZNF750Q32MQ0 723 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 MINDY4Q4G0A6 757 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 C3orf38Q5JPI3 329 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 WBP2NLQ6ICG8 309 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 ZNF620Q6ZNG0 422 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 RTL4Q6ZR62 310 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 AHSA2Q719I0 299 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 Q7L0L9 218 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PRSS41Q7RTY9 318 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 GDF7Q7Z4P5 450 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 VRK2Q86Y07 508 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 OR4N5Q8IXE1 308 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 SLC34A3Q8N130 599 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 DEFB119Q8N690 84 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 SLC15A4Q8N697 577 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 AMER2Q8N7J2 671 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 ZNF615Q8N8J6 731 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PSD4Q8NDX1 1056 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PROKR2Q8NFJ6 384 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 OR1N1Q8NGS0 311 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 C16orf52Q8NHV5 167 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 CNIH3Q8TBE1 160 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 TMEM163Q8TC26 289 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 S100ZQ8WXG8 99 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PIGKQ92643 395 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 TMEM80Q96HE8 168 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 SENP5Q96HI0 755 aaPredicted RBP6.96□□□□□ -1.3
VPS39-204ENST00000561818 SIGLEC11Q96RL6 698 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 TMEM43Q9BTV4 400 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 YIPF2Q9BWQ6 316 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 JAM3Q9BX67 310 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 STRADBQ9C0K7 418 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 GAREM1Q9H706 876 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 SYNPO2LQ9H987 977 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 ACOT13Q9NPJ3 140 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 SDHAF3Q9NRP4 125 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 LANCL2Q9NS86 450 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 REV1Q9UBZ9 1251 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 ENPP5Q9UJA9 477 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 SLC7A7Q9UM01 511 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 ERVK-19Q9WJR5 959 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PCDHGB7Q9Y5F8 929 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 GOLGA4Q13439 2230 aaKnown RBP6.96□□□□□ -1.3
VPS39-204ENST00000561818 C5orf42Q9H799 3197 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 A0A0B4J2E0 115 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 A0A1B0GX12 115 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 TMEM129A0AVI4 362 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 TMEM221A6NGB7 291 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 UNC119BA6NIH7 251 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 OR6C70A6NIJ9 312 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 CPSF4LA6NMK7 179 aaKnown RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 EIF4E1BA6NMX2 242 aaKnown RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 RIIAD1A6NNX1 92 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 B4E171 279 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 J3KTA2 159 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 M0R296 226 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 KHNYNO15037 678 aaKnown RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 B4GAT1O43505 415 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 CDC40O60508 579 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS39-204ENST00000561818 FCMRO60667 390 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 WBP4O75554 376 aaKnown RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 SCRG1O75711 98 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 IGKV3-11P04433 115 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 RPLP0P05388 317 aaKnown RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 GIMD1P0DJR0 217 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 APEHP13798 732 aaKnown RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 ZNF3P17036 446 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 CD53P19397 219 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 PGCP20142 388 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 PCMT1P22061 227 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 PSMB9P28065 219 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 POU1F1P28069 291 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 CSF2RBP32927 897 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 SOX6P35712 828 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 TSPAN7P41732 249 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 SLC15A1P46059 708 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 CDH15P55291 814 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 SLC26A5P58743 744 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 TAS2R43P59537 309 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 BDH1Q02338 343 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 EMX1Q04741 257 aaPredicted RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 EIF3IQ13347 325 aaKnown RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 PMS2P3Q13401 168 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 OR1Q1Q15612 314 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 TRAM1Q15629 374 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 SNAPC1Q16533 368 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 DGUOKQ16854 277 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 PGGHGQ32M88 737 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 NKAIN1Q4KMZ8 207 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 KLHL26Q53HC5 615 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 TRIM61Q5EBN2 209 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 ALG10BQ5I7T1 473 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 EMC4Q5J8M3 183 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 LCN1P1Q5VSP4 162 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 NXNL2Q5VZ03 156 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 XAF1Q6GPH4 301 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 OVCH1Q7RTY7 1134 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 ZER1Q7Z7L7 766 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms