RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 TSPAN31Q12999 210 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 SLX4IPQ5VYV7 408 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 ZNF613Q6PF04 617 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 KCTD8Q6ZWB6 473 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 RRM2BQ7LG56 351 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 ANKRD37Q7Z713 158 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 C9orf40Q8IXQ3 194 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 RNF113BQ8IZP6 322 aaKnown RBP11.7□□□□□ -0.54
USP3-213ENST00000559711 C17orf47Q8NEP4 570 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 PIGXQ8TBF5 258 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 SGCDQ92629 289 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 RNF31Q96EP0 1072 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 LMF1Q96S06 567 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 CTRCQ99895 268 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 UBQLN4Q9NRR5 601 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 PAK1IP1Q9NWT1 392 aaPredicted RBP11.7□□□□□ -0.54
USP3-213ENST00000559711 SCN3BQ9NY72 215 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 COPS7AQ9UBW8 275 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 MRTO4Q9UKD2 239 aaKnown RBP11.7□□□□□ -0.54
USP3-213ENST00000559711 SLC7A7Q9UM01 511 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 PPIEQ9UNP9 301 aaKnown RBP11.7□□□□□ -0.54
USP3-213ENST00000559711 WDFY4Q6ZS81 3184 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 CDX4O14627 284 aaPredicted RBP11.69□□□□□ -0.54
USP3-213ENST00000559711 KLF4O43474 513 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 MPZL2O60487 215 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 MRPS14O60783 128 aaKnown RBP11.69□□□□□ -0.54
USP3-213ENST00000559711 CNOT3O75175 753 aaKnown RBP11.69□□□□□ -0.54
USP3-213ENST00000559711 ALOX12BO75342 701 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 IGFBP1P08833 259 aaPredicted RBP11.69□□□□□ -0.54
USP3-213ENST00000559711 ZNF806P0C7X5 589 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 CD59P13987 128 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 POU1F1P28069 291 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 CCKBRP32239 447 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 KRT20P35900 424 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 IDH2P48735 452 aaKnown RBP11.69□□□□□ -0.54
USP3-213ENST00000559711 RNF144AP50876 292 aaPredicted RBP11.69□□□□□ -0.54
USP3-213ENST00000559711 SMN1Q16637 294 aaKnown RBP11.69□□□□□ -0.54
USP3-213ENST00000559711 TMEM236Q5W0B7 351 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 C12orf73Q69YU5 71 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 MRPL14Q6P1L8 145 aaKnown RBP11.69□□□□□ -0.54
USP3-213ENST00000559711 SHISA6Q6ZSJ9 500 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 ZNF550Q7Z398 422 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 CCDC103Q8IW40 242 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 SPARTQ8N0X7 666 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 ZNF614Q8N883 585 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 LSMEM1Q8N8F7 131 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 ZNF441Q8N8Z8 693 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 TMEM255BQ8WV15 326 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 TMIGD2Q96BF3 282 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 LRFN5Q96NI6 719 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 NODALQ96S42 347 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 SPSB2Q99619 263 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 TRIM2Q9C040 744 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 SEMA4CQ9C0C4 833 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 WWTR1Q9GZV5 400 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 TMEM27Q9HBJ8 222 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 IMPAD1Q9NX62 359 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 PCDHGB1Q9Y5G3 927 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 NINQ8N4C6 2090 aa11.69□□□□□ -0.54
USP3-213ENST00000559711 A0A0B4J2E0 115 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 A0A1B0GX12 115 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 B4E171 279 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 PTGES3LE9PB15 166 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 PRKNO60260 465 aaPredicted RBP11.68□□□□□ -0.54
USP3-213ENST00000559711 GDF9O60383 454 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 ADAM11O75078 769 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 SOX14O95416 240 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 NTN1O95631 604 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 CCL4P13236 92 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 FPR3P25089 353 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 TSPAN7P41732 249 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 STAT5AP42229 794 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 EMP2P54851 167 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 FOXL2P58012 376 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 PSPHP78330 225 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 ZBED5Q49AG3 693 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 FNDC7Q5VTL7 733 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 XAF1Q6GPH4 301 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 LCN10Q6JVE6 187 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 RBM44Q6ZP01 1051 aaKnown RBP11.68□□□□□ -0.54
USP3-213ENST00000559711 RASSF6Q6ZTQ3 369 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 SLC29A4Q7RTT9 530 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 P3H2Q8IVL5 708 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 NRMQ8IXM6 262 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 NFAM1Q8NET5 270 aaPredicted RBP11.68□□□□□ -0.54
USP3-213ENST00000559711 TRUB1Q8WWH5 349 aaKnown RBP11.68□□□□□ -0.54
USP3-213ENST00000559711 IPCEF1Q8WWN9 437 aaPredicted RBP11.68□□□□□ -0.54
USP3-213ENST00000559711 EFHD2Q96C19 240 aaPredicted RBP11.68□□□□□ -0.54
USP3-213ENST00000559711 HSPBAP1Q96EW2 488 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 TUBA1CQ9BQE3 449 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 POLR1BQ9H9Y6 1135 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 SLC35A3Q9Y2D2 325 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 CEPT1Q9Y6K0 416 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 ASCC3Q8N3C0 2202 aaKnown RBP11.68□□□□□ -0.54
USP3-213ENST00000559711 SAGE2PA6NJ88 616 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 H3BN98 237 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 CSTAP01040 98 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 TBXA2RP21731 343 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 TTKP33981 857 aa11.68□□□□□ -0.54
USP3-213ENST00000559711 GIPRP48546 466 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms