RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 LRRC46Q96FV0 321 aa11.28□□□□□ -0.6
SMAD3-208ENST00000558827 PGM2Q96G03 612 aa11.28□□□□□ -0.6
SMAD3-208ENST00000558827 MARK4Q96L34 752 aa11.28□□□□□ -0.6
SMAD3-208ENST00000558827 PIGQQ9BRB3 760 aa11.28□□□□□ -0.6
SMAD3-208ENST00000558827 POLDIP3Q9BY77 421 aaKnown RBP11.28□□□□□ -0.6
SMAD3-208ENST00000558827 BHLHE41Q9C0J9 482 aaPredicted RBP11.28□□□□□ -0.6
SMAD3-208ENST00000558827 OPN3Q9H1Y3 402 aaPredicted RBP11.28□□□□□ -0.6
SMAD3-208ENST00000558827 SERHL2Q9H4I8 314 aa11.28□□□□□ -0.6
SMAD3-208ENST00000558827 WDR55Q9H6Y2 383 aaPredicted RBP11.28□□□□□ -0.6
SMAD3-208ENST00000558827 UBQLN4Q9NRR5 601 aa11.28□□□□□ -0.6
SMAD3-208ENST00000558827 CARD8Q9Y2G2 431 aa11.28□□□□□ -0.6
SMAD3-208ENST00000558827 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.28□□□□□ -0.6
SMAD3-208ENST00000558827 RNF103-CHMP3A0A140T963 221 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 A0A1W2PNV4 684 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 TUBAL3A6NHL2 446 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 SDHDO14521 159 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 CYP7B1O75881 506 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 NUDT14O95848 222 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 LBPP18428 481 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 MATN1P21941 496 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 EIF1AXP47813 144 aaKnown RBP11.27□□□□□ -0.61
SMAD3-208ENST00000558827 SLC6A8P48029 635 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 UFM1P61960 85 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 MAD2L1Q13257 205 aaPredicted RBP11.27□□□□□ -0.61
SMAD3-208ENST00000558827 PON3Q15166 354 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 GPR68Q15743 365 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 BCL2A1Q16548 175 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 FLYWCH1Q4VC44 716 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 SPANXN4Q5MJ08 99 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 EXOSC6Q5RKV6 272 aaKnown RBP11.27□□□□□ -0.61
SMAD3-208ENST00000558827 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.27□□□□□ -0.61
SMAD3-208ENST00000558827 FBXW10Q5XX13 1052 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 NXNQ6DKJ4 435 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 ZCCHC12Q6PEW1 402 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 CBLN3Q6UW01 205 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 BTLAQ7Z6A9 289 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 B4GALNT2Q8NHY0 566 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 POC1BQ8TC44 478 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 RAB8BQ92930 207 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 DTNBP1Q96EV8 351 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 SLC35G5Q96KT7 338 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 TEX37Q96LM6 180 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 RNF145Q96MT1 663 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 PRRG4Q9BZD6 226 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 MED17Q9NVC6 651 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 GALNT8Q9NY28 637 aa11.27□□□□□ -0.61
SMAD3-208ENST00000558827 PRRC2AP48634 2157 aaKnown RBP11.27□□□□□ -0.61
SMAD3-208ENST00000558827 MAP1AP78559 2803 aaPredicted RBP11.27□□□□□ -0.61
SMAD3-208ENST00000558827 IGLV3-32A0A0A0MS00 114 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 GTPBP1O00178 669 aaKnown RBP11.26□□□□□ -0.61
SMAD3-208ENST00000558827 TNFSF11O14788 317 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 CXCL13O43927 109 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 FCMRO60667 390 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 TNFRSF21O75509 655 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 CTAG2O75638 210 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 TNFSF13O75888 250 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 AQP8O94778 261 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 IL18BPO95998 194 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 ALDOCP09972 364 aaKnown RBP11.26□□□□□ -0.61
SMAD3-208ENST00000558827 OR12D1P0DN82 309 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 CAPN3P20807 821 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 EPHA3P29320 983 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 SHC1P29353 583 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 SFTPDP35247 375 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 CCR4P51679 360 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 ZNF41P51814 821 aaPredicted RBP11.26□□□□□ -0.61
SMAD3-208ENST00000558827 ZNF117Q03924 483 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 FAM27E3Q08E93 113 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 GANABQ14697 944 aaKnown RBP11.26□□□□□ -0.61
SMAD3-208ENST00000558827 TOMM34Q15785 309 aaPredicted RBP11.26□□□□□ -0.61
SMAD3-208ENST00000558827 PLPPR5Q32ZL2 321 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 FBXL19-AS1Q494R0 122 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 BEND6Q5SZJ8 279 aaPredicted RBP11.26□□□□□ -0.61
SMAD3-208ENST00000558827 TNFAIP8L2Q6P589 184 aaPredicted RBP11.26□□□□□ -0.61
SMAD3-208ENST00000558827 GGNQ86UU5 652 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 HOMEZQ8IX15 550 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 TMCO5AQ8N6Q1 288 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 PSMA8Q8TAA3 256 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 SFXN5Q8TD22 340 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 ARL8AQ96BM9 186 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 ZNF524Q96C55 264 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 STARD4Q96DR4 205 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 STACQ99469 402 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 SFXN3Q9BWM7 321 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 OR51I1Q9H343 314 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 TMBIM4Q9HC24 238 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 DUSP22Q9NRW4 184 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 JKAMPQ9P055 326 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 MKLN1Q9UL63 735 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 PCDHGB4Q9UN71 923 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 ACTL7BQ9Y614 415 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 HRNRQ86YZ3 2850 aaPredicted RBP11.26□□□□□ -0.61
SMAD3-208ENST00000558827 HEATR5AQ86XA9 2040 aa11.26□□□□□ -0.61
SMAD3-208ENST00000558827 HIVEP1P15822 2718 aa11.25□□□□□ -0.61
SMAD3-208ENST00000558827 A0A0J9YW62 118 aa11.25□□□□□ -0.61
SMAD3-208ENST00000558827 CENPVL1A0A0U1RR11 272 aa11.25□□□□□ -0.61
SMAD3-208ENST00000558827 A6NNC1 897 aa11.25□□□□□ -0.61
SMAD3-208ENST00000558827 SCN2BO60939 215 aa11.25□□□□□ -0.61
SMAD3-208ENST00000558827 ERLIN1O75477 346 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms