RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 ACTRT2Q8TDY3 377 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 FAM120BQ96EK7 910 aaKnown RBP13.14□□□□□ -0.31
SHMT2-235ENST00000557740 ZC3HAV1LQ96H79 300 aaKnown RBP13.14□□□□□ -0.31
SHMT2-235ENST00000557740 POM121Q96HA1 1249 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 RNF145Q96MT1 663 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 BTBD2Q9BX70 525 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 KLHL4Q9C0H6 718 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 TMEM185BQ9H7F4 350 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 L2HGDHQ9H9P8 463 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 MED17Q9NVC6 651 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 ATAD3AQ9NVI7 634 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 SLC17A7Q9P2U7 560 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 GIMAP2Q9UG22 337 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 ATP6V1HQ9UI12 483 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 A0A1W2PQD3 144 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 C7orf72A4D263 438 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 PEX11AO75192 247 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 SLC6A8P48029 635 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 TP53BP2Q13625 1128 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 LASP1Q14847 261 aaKnown RBP13.13□□□□□ -0.31
SHMT2-235ENST00000557740 MLC1Q15049 377 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 PLPPR5Q32ZL2 321 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 UGT3A2Q3SY77 523 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 XKR7Q5GH72 579 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 PDSS1Q5T2R2 415 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 ZNF527Q8NB42 609 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 OR7A2PQ8NGA2 310 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 OR56A1Q8NGH5 318 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 OR6K3Q8NGY3 331 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 OR2V1Q8NHB1 315 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 CDS1Q92903 461 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 CAVIN3Q969G5 261 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 C16orf58Q96GQ5 468 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 GMPPAQ96IJ6 420 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-235ENST00000557740 STACQ99469 402 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 C1orf50Q9BV19 199 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 UBTD1Q9HAC8 227 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 FANCFQ9NPI8 374 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 DUSP22Q9NRW4 184 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 SIRT3Q9NTG7 399 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-235ENST00000557740 CLEC4AQ9UMR7 237 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 NAV3Q8IVL0 2385 aa13.13□□□□□ -0.31
SHMT2-235ENST00000557740 TNFSF11O14788 317 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 SIAH2O43255 324 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 ARHGEF9O43307 516 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 CXCL13O43927 109 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 SMPD2O60906 423 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 SS18L1O75177 396 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-235ENST00000557740 SPAG7O75391 227 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 SKAP2O75563 359 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-235ENST00000557740 OPN1LWP04000 364 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 HMGN2P05204 90 aaKnown RBP13.12□□□□□ -0.31
SHMT2-235ENST00000557740 KRT16P08779 473 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 NUDT17P0C025 328 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 LAMP1P11279 417 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 HOXC12P31275 282 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 SERPINB5P36952 375 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 RAC1P63000 192 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 NKX6-1P78426 367 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-235ENST00000557740 CD226Q15762 336 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 CTU2Q2VPK5 515 aaKnown RBP13.12□□□□□ -0.31
SHMT2-235ENST00000557740 KRTAP21-3Q3LHN1 58 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 EXOSC6Q5RKV6 272 aaKnown RBP13.12□□□□□ -0.31
SHMT2-235ENST00000557740 CPTPQ5TA50 214 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 SHEQ5VZ18 495 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 HBMQ6B0K9 141 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 ESPNLQ6ZVH7 1005 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 BIVMQ86UB2 503 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 P3H2Q8IVL5 708 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 FNDC5Q8NAU1 212 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 B4GALNT2Q8NHY0 566 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 TCP10LQ8TDR4 215 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 PIGTQ969N2 578 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 ADGRG7Q96K78 797 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 PRPF18Q99633 342 aaKnown RBP13.12□□□□□ -0.31
SHMT2-235ENST00000557740 CCL19Q99731 98 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 GSX1Q9H4S2 264 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-235ENST00000557740 ANKZF1Q9H8Y5 726 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 FBXO34Q9NWN3 711 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 LGALS13Q9UHV8 139 aa13.12□□□□□ -0.31
SHMT2-235ENST00000557740 FAF1Q9UNN5 650 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-235ENST00000557740 H3BNH8 94 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 ADAMDEC1O15204 470 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 LYPLA1O75608 230 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-235ENST00000557740 SLU7O95391 586 aaKnown RBP13.11□□□□□ -0.31
SHMT2-235ENST00000557740 NUDT14O95848 222 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 PPP3CBP16298 524 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 FPR1P21462 350 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 ELK4P28324 431 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 EIF1P41567 113 aaKnown RBP13.11□□□□□ -0.31
SHMT2-235ENST00000557740 CCT3P49368 545 aaKnown RBP13.11□□□□□ -0.31
SHMT2-235ENST00000557740 PTGR1Q14914 329 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 LSM12Q3MHD2 195 aaKnown RBP13.11□□□□□ -0.31
SHMT2-235ENST00000557740 Q5PR19 223 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 DCST2Q5T1A1 773 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 ANKRD34AQ69YU3 496 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 CDC73Q6P1J9 531 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 STK32CQ86UX6 486 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 CXorf67Q86X51 503 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-235ENST00000557740 NATD1Q8N6N6 113 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms