RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 C1GALT1C1Q96EU7 318 aa12.82□□□□□ -0.36
PTCH1-226ENST00000553011 SH3YL1Q96HL8 342 aaPredicted RBP12.82□□□□□ -0.36
PTCH1-226ENST00000553011 IKZF5Q9H5V7 419 aa12.82□□□□□ -0.36
PTCH1-226ENST00000553011 TAS2R10Q9NYW0 307 aa12.82□□□□□ -0.36
PTCH1-226ENST00000553011 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.82□□□□□ -0.36
PTCH1-226ENST00000553011 ACAD8Q9UKU7 415 aa12.82□□□□□ -0.36
PTCH1-226ENST00000553011 RPH3AQ9Y2J0 694 aaPredicted RBP12.82□□□□□ -0.36
PTCH1-226ENST00000553011 DTNAQ9Y4J8 743 aa12.82□□□□□ -0.36
PTCH1-226ENST00000553011 MED12LQ86YW9 2145 aa12.82□□□□□ -0.36
PTCH1-226ENST00000553011 FBP2O00757 339 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 UGT2B17O75795 530 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 NUDT7P0C024 238 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 NR2F1P10589 423 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 BMP7P18075 431 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 MAGEA8P43361 318 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 DSCR4P56555 118 aaPredicted RBP12.81□□□□□ -0.36
PTCH1-226ENST00000553011 HPCAP84074 193 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 CRYZQ08257 329 aaKnown RBP12.81□□□□□ -0.36
PTCH1-226ENST00000553011 RGNQ15493 299 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 ZNF141Q15928 474 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 DHDDSQ86SQ9 333 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 ZNF619Q8N2I2 560 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 C10orf111Q8N326 155 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 DPP10Q8N608 796 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 ZG16BQ96DA0 208 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 TRNT1Q96Q11 434 aaKnown RBP12.81□□□□□ -0.36
PTCH1-226ENST00000553011 UGT2B28Q9BY64 529 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 SAP130Q9H0E3 1048 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 NSRP1Q9H0G5 558 aaKnown RBP12.81□□□□□ -0.36
PTCH1-226ENST00000553011 QRSL1Q9H0R6 528 aaKnown RBP12.81□□□□□ -0.36
PTCH1-226ENST00000553011 SLC38A1Q9H2H9 487 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 RUBCNLQ9H714 662 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 PTGES2Q9H7Z7 377 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 POLE3Q9NRF9 147 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 ARMCX1Q9P291 453 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 LIPT1Q9Y234 373 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 CAPN7Q9Y6W3 813 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 COL12A1Q99715 3063 aa12.81□□□□□ -0.36
PTCH1-226ENST00000553011 SERINC4A6NH21 518 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 H3BNH8 94 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 BCKDKO14874 412 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 HCRTR2O43614 444 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 LDLRP01130 860 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 GUSBP08236 651 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 ESRRAP11474 423 aaPredicted RBP12.8□□□□□ -0.36
PTCH1-226ENST00000553011 HK1P19367 917 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 GFRA1P56159 465 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 B3GALT5-AS1P59052 145 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 ZNF117Q03924 483 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 FADDQ13158 208 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 NFYCQ13952 458 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 ZNF630Q2M218 657 aaPredicted RBP12.8□□□□□ -0.36
PTCH1-226ENST00000553011 WLSQ5T9L3 541 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 AP1ARQ63HQ0 302 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 VASNQ6EMK4 673 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 ZNF585AQ6P3V2 769 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 CBLN3Q6UW01 205 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 ARSKQ6UWY0 536 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 LRRC74BQ6ZQY2 392 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 MTERF4Q7Z6M4 381 aaKnown RBP12.8□□□□□ -0.36
PTCH1-226ENST00000553011 CPLX4Q7Z7G2 160 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 IFNEQ86WN2 208 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 SNX32Q86XE0 403 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 MISPQ8IVT2 679 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 RPRMLQ8N4K4 120 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 OR5M1Q8NGP8 315 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 B4GALNT2Q8NHY0 566 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 ABTB1Q969K4 478 aaPredicted RBP12.8□□□□□ -0.36
PTCH1-226ENST00000553011 DTNBP1Q96EV8 351 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 CCDC120Q96HB5 630 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 SFXN2Q96NB2 322 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 TIMP4Q99727 224 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 CPPED1Q9BRF8 314 aaPredicted RBP12.8□□□□□ -0.36
PTCH1-226ENST00000553011 TRIM8Q9BZR9 551 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 RAD21L1Q9H4I0 556 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 MRGBPQ9NV56 204 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 FAM53CQ9NYF3 392 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 P2RX2Q9UBL9 471 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 VDAC3Q9Y277 283 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 CARD8Q9Y2G2 431 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 MEMO1Q9Y316 297 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 MRPS18CQ9Y3D5 142 aaKnown RBP12.8□□□□□ -0.36
PTCH1-226ENST00000553011 MPDZO75970 2070 aa12.8□□□□□ -0.36
PTCH1-226ENST00000553011 LOC100653049A0A140TA62 436 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 SHISA8B8ZZ34 492 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 GTPBP1O00178 669 aaKnown RBP12.79□□□□□ -0.36
PTCH1-226ENST00000553011 SNX3O60493 162 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 ZG16O60844 167 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 BCAS1O75363 584 aaPredicted RBP12.79□□□□□ -0.36
PTCH1-226ENST00000553011 KRT34O76011 436 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 BCHEP06276 602 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 TFPTP0C1Z6 253 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 BMP2P12643 396 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 MSX1P28360 303 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 STARP49675 285 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 SELPLGQ14242 412 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 GANABQ14697 944 aaKnown RBP12.79□□□□□ -0.36
PTCH1-226ENST00000553011 RUNDC3AQ59EK9 446 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 NHSL2Q5HYW2 709 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 RPS26P11Q5JNZ5 115 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms