RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 XAGE5Q8WWM1 108 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 DTNBP1Q96EV8 351 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 ITCHQ96J02 903 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 UCN2Q96RP3 112 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 PTGES2Q9H7Z7 377 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 RMND5AQ9H871 391 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 POLE3Q9NRF9 147 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 EXD2Q9NVH0 621 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 CCDC167Q9P0B6 97 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 DCTN4Q9UJW0 460 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 ICAM5Q9UMF0 924 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 DTNAQ9Y4J8 743 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 GMEB1Q9Y692 573 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 TRBV5-3A0A0A0MS03 114 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 NPIPA5A0A0B4J1W7 369 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 OR2M5A3KFT3 312 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 CD8B2A6NJW9 211 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 NPIPA7E9PJI5 369 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 LINC01387J3KSC0 135 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 KIAA0513O60268 411 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 NPIPA8P0DM63 369 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 ZNF708P17019 499 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 HK1P19367 917 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 PSMA4P25789 261 aaKnown RBP11.74□□□□□ -0.53
VPS28-216ENST00000533806 CEACAM8P31997 349 aaPredicted RBP11.74□□□□□ -0.53
VPS28-216ENST00000533806 CHI3L1P36222 383 aaPredicted RBP11.74□□□□□ -0.53
VPS28-216ENST00000533806 ADH7P40394 386 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 STARP49675 285 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 KHKP50053 298 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 STX1BP61266 288 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 PLAURQ03405 335 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 ZNF117Q03924 483 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 SQLEQ14534 574 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 MAPK14Q16539 360 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 LRIF1Q5T3J3 769 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 RIPPLY2Q5TAB7 128 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 NSUN5P2Q63ZY6 315 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 HIST2H2BCQ6DN03 193 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 TYW3Q6IPR3 259 aaKnown RBP11.74□□□□□ -0.53
VPS28-216ENST00000533806 AAGABQ6PD74 315 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 SLC2A7Q6PXP3 512 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 CBLN3Q6UW01 205 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 FRRS1Q6ZNA5 592 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 MSRB3Q8IXL7 192 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 GATSQ8NAP1 163 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 ZNF527Q8NB42 609 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 LILRB4Q8NHJ6 448 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 OIT3Q8WWZ8 545 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 RND1Q92730 232 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 ZNF524Q96C55 264 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 ROPN1LQ96C74 230 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 ZG16BQ96DA0 208 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 ZNF317Q96PQ6 595 aaPredicted RBP11.74□□□□□ -0.53
VPS28-216ENST00000533806 TRNT1Q96Q11 434 aaKnown RBP11.74□□□□□ -0.53
VPS28-216ENST00000533806 NPAS1Q99742 590 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 FGFR1OP2Q9NVK5 253 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 SLC25A37Q9NYZ2 338 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 SLAMF8Q9P0V8 285 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 DKKL1Q9UK85 242 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 MKLN1Q9UL63 735 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 RNF6Q9Y252 685 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 RPH3AQ9Y2J0 694 aaPredicted RBP11.74□□□□□ -0.53
VPS28-216ENST00000533806 ZNF337Q9Y3M9 751 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 PCDHB14Q9Y5E9 798 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 MED12Q93074 2177 aa11.74□□□□□ -0.53
VPS28-216ENST00000533806 A0A087WZY1 265 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 A0A096LPI6 279 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 A0A0G2JND7 137 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 A0A0G2JNJ9 132 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 SERINC4A6NH21 518 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 ETV2O00321 342 aaPredicted RBP11.73□□□□□ -0.53
VPS28-216ENST00000533806 CLDN14O95500 239 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 KRT75O95678 551 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 LINGO3P0C6S8 592 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 HPGDP15428 266 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 COL8A1P27658 744 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 CHRNB4P30926 498 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 TIMP3P35625 211 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 MDH1P40925 334 aaKnown RBP11.73□□□□□ -0.53
VPS28-216ENST00000533806 GPR68Q15743 365 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 SYPL1Q16563 259 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 ZNF630Q2M218 657 aaPredicted RBP11.73□□□□□ -0.53
VPS28-216ENST00000533806 PLPPR5Q32ZL2 321 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 AGKQ53H12 422 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 PAGE3Q5JUK9 113 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 PDZK1Q5T2W1 519 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 POMZP3Q6PJE2 187 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 ENPP6Q6UWR7 440 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 C16orf62Q7Z3J2 963 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 GTPBP8Q8N3Z3 284 aaPredicted RBP11.73□□□□□ -0.53
VPS28-216ENST00000533806 ANKFN1Q8N957 763 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 ACBD4Q8NC06 268 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 B4GALNT2Q8NHY0 566 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 POC1BQ8TC44 478 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 SPDL1Q96EA4 605 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 AURKBQ96GD4 344 aaPredicted RBP11.73□□□□□ -0.53
VPS28-216ENST00000533806 SFXN2Q96NB2 322 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 TUBA1CQ9BQE3 449 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 SLC38A1Q9H2H9 487 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 RABEP2Q9H5N1 569 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms