RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CCDC120Q96HB5 630 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 METTL2AQ96IZ6 378 aaKnown RBP10.98□□□□□ -0.65
SYNPO-204ENST00000519664 TRPV4Q9HBA0 871 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 NUDT15Q9NV35 164 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 DZANK1Q9NVP4 752 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 VNN3Q9NY84 501 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 COQ3Q9NZJ6 369 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 NOP16Q9Y3C1 178 aaKnown RBP10.98□□□□□ -0.65
SYNPO-204ENST00000519664 BOLA1Q9Y3E2 137 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 SHANK3Q9BYB0 1731 aa10.98□□□□□ -0.65
SYNPO-204ENST00000519664 TCRBV5S2A0A599 114 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 H0Y8X5 98 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 CD3GP09693 182 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 SLC19A1P41440 591 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 CEBPGP53567 150 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 PSMA6P60900 246 aaKnown RBP10.97□□□□□ -0.65
SYNPO-204ENST00000519664 ERVK-25P63136 954 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 B4GALNT1Q00973 533 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 TAGLNQ01995 201 aaKnown RBP10.97□□□□□ -0.65
SYNPO-204ENST00000519664 PLCXD2Q0VAA5 305 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 RPE65Q16518 533 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 PUS10Q3MIT2 529 aaKnown RBP10.97□□□□□ -0.65
SYNPO-204ENST00000519664 KCTD9Q7L273 389 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 CDRT4Q8N9R6 151 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 UQCC2Q9BRT2 126 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 G6PC3Q9BUM1 346 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 CCDC32Q9BV29 185 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 MS4A8Q9BY19 250 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 ZNF385DQ9H6B1 395 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 SDHAF3Q9NRP4 125 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 INIPQ9NRY2 104 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 C14orf105Q9NVL8 296 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 PLEKHA6Q9Y2H5 1048 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 MAB21L2Q9Y586 359 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 CORINQ9Y5Q5 1042 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 DLEC1Q9Y238 1755 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 PRSS38A1L453 326 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 FZD6O60353 706 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 FUT1P19526 365 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 IDUAP35475 653 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 CASP3P42574 277 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 GALK2Q01415 458 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 ELOCQ15369 112 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 SEC23BQ15437 767 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 CARD17Q5XLA6 110 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 ALG1LQ6GMV1 187 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 TMEM225Q6GV28 225 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 OR4K17Q8NGC6 315 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 NR4A3Q92570 626 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 LMF1Q96S06 567 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 MBOAT4Q96T53 435 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 PINK1Q9BXM7 581 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 OR10A4Q9H209 315 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 TMEM185BQ9H7F4 350 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 SYNPO2LQ9H987 977 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 SLC2A4RGQ9NR83 387 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 PRODH2Q9UF12 536 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 PCDHGA6Q9Y5G7 932 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 CNOT1A5YKK6 2376 aaKnown RBP10.97□□□□□ -0.65
SYNPO-204ENST00000519664 LYRM1O43325 122 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 ITGA5P08648 1049 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 DEFA5Q01523 94 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 DHRS4L2Q6PKH6 230 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 SYNPOQ8N3V7 929 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 FRMD1Q8N878 549 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 TXNDC15Q96J42 360 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 ADOQ96SZ5 270 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 NTN4Q9HB63 628 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 SLC23A2Q9UGH3 650 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 SLC5A10A0PJK1 596 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 A8MVJ9 347 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 DNASE1P24855 282 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 GP2P55259 537 aaKnown RBP10.97□□□□□ -0.65
SYNPO-204ENST00000519664 SLC35A2P78381 396 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 MAT1AQ00266 395 aaKnown RBP10.97□□□□□ -0.65
SYNPO-204ENST00000519664 DEFB133Q30KQ1 61 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 TRMT10AQ8TBZ6 339 aaKnown RBP10.97□□□□□ -0.65
SYNPO-204ENST00000519664 RBP7Q96R05 134 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.97□□□□□ -0.65
SYNPO-204ENST00000519664 GDE1Q9NZC3 331 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 OR6C2Q9NZP2 312 aa10.97□□□□□ -0.65
SYNPO-204ENST00000519664 C17orf113A0A1B0GUU1 675 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 NARSO43776 548 aaKnown RBP10.96□□□□□ -0.65
SYNPO-204ENST00000519664 KLK8O60259 260 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 RGS9O75916 674 aaPredicted RBP10.96□□□□□ -0.65
SYNPO-204ENST00000519664 GTF2F2P13984 249 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 NR0B1P51843 470 aaKnown RBP10.96□□□□□ -0.65
SYNPO-204ENST00000519664 LRIF1Q5T3J3 769 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 PAQR6Q6TCH4 344 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 TMEM64Q6YI46 380 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 QSOX2Q6ZRP7 698 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 OR52R1Q8NGF1 315 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 OR13C2Q8NGS9 318 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 SETD6Q8TBK2 473 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 ZDHHC1Q8WTX9 485 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 DNAJA4Q8WW22 397 aaPredicted RBP10.96□□□□□ -0.65
SYNPO-204ENST00000519664 CNN2Q99439 309 aaKnown RBP10.96□□□□□ -0.65
SYNPO-204ENST00000519664 CMKLR1Q99788 373 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 C1QTNF3Q9BXJ4 246 aa10.96□□□□□ -0.65
SYNPO-204ENST00000519664 SERINC1Q9NRX5 453 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms