RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	FAM157C	P0CG43	387 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	SLC18A2	Q05940	514 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	RNPS1	Q15287	305 aa	Known RBP	14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	ZNF239	Q16600	458 aa	Known RBP	14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	VPS26B	Q4G0F5	336 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	ATG4D	Q86TL0	474 aa	Predicted RBP	14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	TRABD2A	Q86V40	505 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	LILRA2	Q8N149	483 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	BANP	Q8N9N5	519 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	GATS	Q8NAP1	163 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	OR4C3	Q8NH37	302 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	PIWIL2	Q8TC59	973 aa	Known RBP	14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	RNF128	Q8TEB7	428 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	ABHD3	Q8WU67	409 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	ROBO4	Q8WZ75	1007 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	KISS1R	Q969F8	398 aa	Predicted RBP	14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	KLHL15	Q96M94	604 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	TMEM237	Q96Q45	408 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	KCNA7	Q96RP8	456 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	RHNO1	Q9BSD3	238 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	TRAF4	Q9BUZ4	470 aa	Predicted RBP	14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	POTEKP	Q9BYX7	375 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	TRIM2	Q9C040	744 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	GRIP2	Q9C0E4	1043 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	MYNN	Q9NPC7	610 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	EQTN	Q9NQ60	294 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	TIGAR	Q9NQ88	270 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	MED17	Q9NVC6	651 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	FAIM	Q9NVQ4	179 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	CISD1	Q9NZ45	108 aa	Known RBP	14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	ZNF180	Q9UJW8	692 aa		14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	GDF2	Q9UK05	429 aa	Predicted RBP	14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	WBP11	Q9Y2W2	641 aa	Known RBP	14.01	□□□□□ -0.17
LMNA-223	ENST00000515459	FREM1	Q5H8C1	2179 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	SERTM1	A2A2V5	107 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	POC1B-GALNT4	F8VUJ3	575 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	SSX4	O60224	188 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	C8B	P07358	591 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	PRPS2	P11908	318 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	IMPDH1	P20839	514 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	PKNOX1	P55347	436 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	SLC7A5	Q01650	507 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	LCP2	Q13094	533 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	ITGAD	Q13349	1161 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	P2RY6	Q15077	328 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	NRF1	Q16656	503 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	GLE1	Q53GS7	698 aa	Known RBP	14	□□□□□ -0.17
LMNA-223	ENST00000515459	NUFIP2	Q7Z417	695 aa	Known RBP	14	□□□□□ -0.17
LMNA-223	ENST00000515459	RELL1	Q8IUW5	271 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	TUSC5	Q8IXB3	177 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	POC1B	Q8TC44	478 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	CPNE4	Q96A23	557 aa	Predicted RBP	14	□□□□□ -0.17
LMNA-223	ENST00000515459	KLHL13	Q9P2N7	655 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	CDC42EP3	Q9UKI2	254 aa		14	□□□□□ -0.17
LMNA-223	ENST00000515459	GPRIN2	O60269	458 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	DLX3	O60479	287 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	NKX2-2	O95096	273 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	NTN1	O95631	604 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	ADA	P00813	363 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	CD8A	P01732	235 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	HPGD	P15428	266 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	SFTPD	P35247	375 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	MAP3K8	P41279	467 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	EIF1	P41567	113 aa	Known RBP	13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	C6orf52	Q5T4I8	152 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	SEZ6L2	Q6UXD5	910 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	DTX2	Q86UW9	622 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	MISP	Q8IVT2	679 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	DCAKD	Q8WVC6	231 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	HOXB13	Q92826	284 aa	Predicted RBP	13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	SH3YL1	Q96HL8	342 aa	Predicted RBP	13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	CDC42EP4	Q9H3Q1	356 aa	Known RBP	13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	GP6	Q9HCN6	339 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	TMEM216	Q9P0N5	145 aa		13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	POLR3H	Q9Y535	204 aa	Predicted RBP	13.99	□□□□□ -0.17
LMNA-223	ENST00000515459	DPRX	A6NFQ7	191 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	PRKD3	O94806	890 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	SNRPA	P09012	282 aa	Known RBP	13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	LINGO3	P0C6S8	592 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	ATP5F1	P24539	256 aa	Predicted RBP	13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	ELK4	P28324	431 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	SHC1	P29353	583 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	GPC1	P35052	558 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	MANF	P55145	182 aa	Known RBP	13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	HSPB3	Q12988	150 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	IMPG1	Q17R60	797 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	C8orf74	Q6P047	294 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	IKBIP	Q70UQ0	350 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	FCRLA	Q7L513	359 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	BHLHA15	Q7RTS1	189 aa	Predicted RBP	13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	ZNF551	Q7Z340	670 aa	Predicted RBP	13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	TDRP	Q86YL5	185 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	SLC22A9	Q8IVM8	553 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	CDRT4	Q8N9R6	151 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	OR6Y1	Q8NGX8	325 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	CEP70	Q8NHQ1	597 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	B4GALNT2	Q8NHY0	566 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	FAM76A	Q8TAV0	307 aa		13.98	□□□□□ -0.17
LMNA-223	ENST00000515459	L3HYPDH	Q96EM0	354 aa		13.98	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 37 ms