RNA–Protein interactions for RNA: ENST00000514469.1

HMGXB3-205, Transcript of HMG-box containing 3, humanhuman

TSL 5

Gene HMGXB3, Length 975 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-205ENST00000514469 SNX8Q9Y5X2 465 aa9.41□□□□□ -0.9
HMGXB3-205ENST00000514469 INTS1Q8N201 2190 aaKnown RBP9.41□□□□□ -0.9
HMGXB3-205ENST00000514469 FREM3P0C091 2139 aa9.41□□□□□ -0.9
HMGXB3-205ENST00000514469 DOCK7Q96N67 2140 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 WDR91A4D1P6 747 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 SH3D21A4FU49 640 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 SCDO00767 359 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 SNUPNO95149 360 aaKnown RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 CGAP01215 116 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 KRT16P08779 473 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 FCGR2AP12318 317 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 HPGDP15428 266 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 CCKARP32238 428 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 CCT3P49368 545 aaKnown RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 ZNF41P51814 821 aaPredicted RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 CLDN8P56748 225 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 RPS3AP61247 264 aaKnown RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 ZNF117Q03924 483 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 FGFBP1Q14512 234 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 PDCD2Q16342 344 aaPredicted RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 CTU2Q2VPK5 515 aaKnown RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 LSM12Q3MHD2 195 aaKnown RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 SPDYE7PQ495Y7 208 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 DCST2Q5T1A1 773 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 PAMR1Q6UXH9 720 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 BTLAQ7Z6A9 289 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 MTERF4Q7Z6M4 381 aaKnown RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 CNEP1R1Q8N9A8 125 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 B4GALNT2Q8NHY0 566 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 POC1BQ8TC44 478 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 SMPDL3BQ92485 455 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 CHMP6Q96FZ7 201 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 SH3YL1Q96HL8 342 aaPredicted RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 RNF145Q96MT1 663 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 SORT1Q99523 831 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 PRPF18Q99633 342 aaKnown RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 KLHDC3Q9BQ90 382 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 C20orf27Q9GZN8 174 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 ZNF395Q9H8N7 513 aaPredicted RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 CCM2LQ9NUG4 571 aaPredicted RBP9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 HAO1Q9UJM8 370 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 RAP2CQ9Y3L5 183 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 ACTL7BQ9Y614 415 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 KCNE3Q9Y6H6 103 aa9.4□□□□□ -0.9
HMGXB3-205ENST00000514469 ZNF469Q96JG9 3925 aaPredicted RBP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 NPIPB9F8W1W9 429 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 EIF1AYO14602 144 aaKnown RBP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 SMNDC1O75940 238 aaKnown RBP eCLIP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 AQP8O94778 261 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 SOX30O94993 753 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 HRGP04196 525 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 LINGO3P0C6S8 592 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 MYZAPP0CAP1 466 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 CD8BP10966 210 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 ATP6V1C1P21283 382 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 ELK4P28324 431 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 CD79BP40259 229 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 EIF1AXP47813 144 aaKnown RBP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 RAC1P63000 192 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 HBA1P69905 142 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 SIRPAP78324 504 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 MPP2Q14168 576 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 KLHL26Q53HC5 615 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 CEP85LQ5SZL2 805 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 ZNF474Q6S9Z5 364 aaPredicted RBP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 FAM214BQ7L5A3 538 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 WDR75Q8IWA0 830 aaKnown RBP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 LRRC34Q8IZ02 419 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 KIRREL3Q8IZU9 778 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 ZNF527Q8NB42 609 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 OR10D3Q8NH80 312 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 OR5AK3PQ8NH89 298 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 ADAMTS15Q8TE58 950 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 PGM2Q96G03 612 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 ALPK1Q96QP1 1244 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 HOXD1Q9GZZ0 328 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 OPN3Q9H1Y3 402 aaPredicted RBP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 SERHL2Q9H4I8 314 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 AKTIPQ9H8T0 292 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 PLEKHF2Q9H8W4 249 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 PAQR5Q9NXK6 330 aaPredicted RBP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 STOML1Q9UBI4 398 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 FAF1Q9UNN5 650 aaPredicted RBP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 PLEKHA6Q9Y2H5 1048 aa9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.39□□□□□ -0.91
HMGXB3-205ENST00000514469 NPIPA5A0A0B4J1W7 369 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 A0A1W2PPR1 153 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 NPIPA7E9PJI5 369 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 RNASET2O00584 256 aaKnown RBP9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 ADAMDEC1O15204 470 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 OIP5O43482 229 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 SS18L1O75177 396 aaPredicted RBP9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 ATE1O95260 518 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 NPIPA8P0DM63 369 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 BGNP21810 368 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 DNASE1P24855 282 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 SOAT1P35610 550 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 SLC6A8P48029 635 aa9.38□□□□□ -0.91
HMGXB3-205ENST00000514469 SLC1A6P48664 564 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms