RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 SGCAQ16586 387 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 PAGE3Q5JUK9 113 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC24A5Q71RS6 500 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 WDR20Q8TBZ3 569 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 MIB2Q96AX9 1013 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 HMX1Q9NP08 348 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 KDELR3O43731 214 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 POP7O75817 140 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 GABARAPO95166 117 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 KCNK5O95279 499 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 OR2C1O95371 312 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 TCRBP04435 133 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 CAPNS1P04632 268 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC6A8P48029 635 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 INHBEP58166 350 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 BAMBIQ13145 260 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC43A2Q8N370 569 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 LRRC25Q8N386 305 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 COMMD1Q8N668 190 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 IL17RCQ8NAC3 791 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 NETO2Q8NC67 525 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 AKR7LQ8NHP1 331 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 PCED1BQ96HM7 432 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 SORCS2Q96PQ0 1159 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 MCOLN1Q9GZU1 580 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 CHRDQ9H2X0 955 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 PDZD7Q9H5P4 517 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 GJD2Q9UKL4 321 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 MRPS17Q9Y2R5 130 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 MST1RQ04912 1400 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 APBB3O95704 486 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 ACP2P11117 423 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 TSFMP43897 325 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 GABRA2P47869 451 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 RAB7AP51149 207 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 LILRA4P59901 499 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 PLK5Q496M5 336 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 BTNL8Q6UX41 500 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 FBXW12Q6X9E4 464 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 FAM122AQ96E09 287 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 P2RX7Q99572 595 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 PITX2Q99697 317 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 SEMA4GQ9NTN9 838 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 CD84Q9UIB8 345 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 RCE1Q9Y256 329 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 CDC42BPBQ9Y5S2 1711 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 A0A1B0GVG6 124 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 B4DXG7 233 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 PDHXO00330 501 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 KIAA0355O15063 1070 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 HPGDSO60760 199 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 TMEM127O75204 238 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 TK1P04183 234 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 EFNA3P52797 238 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 INHBCP55103 352 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 NFATC4Q14934 902 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 GUK1Q16774 197 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 IQCJQ1A5X6 159 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 ARSJQ5FYB0 599 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 C3orf38Q5JPI3 329 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 CST9LP1Q5W188 147 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 TPGS2Q68CL5 300 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 OR10Q1Q8NGQ4 319 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 CUTCQ9NTM9 273 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 OR2T1O43869 369 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 JTBO76095 146 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 RNF144AP50876 292 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 CCR9P51686 369 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 DGKEP52429 567 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 CHRNEQ04844 493 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 CDC20Q12834 499 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 MSS51Q4VC12 460 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 TMEM135Q86UB9 458 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 TCTE3Q8IZS6 198 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 SIGLECL1Q8N7X8 197 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 OR14L1PQ8NHC6 308 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 CPNE4Q96A23 557 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 ECHDC3Q96DC8 303 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 GNPNAT1Q96EK6 184 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 LMF1Q96S06 567 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 TOLLIPQ9H0E2 274 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 ZDHHC11Q9H8X9 412 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC2A6Q9UGQ3 507 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 K7EQM0 130 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 ENPP3O14638 875 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 CELF2O95319 508 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 BMP4P12644 408 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 IRF2P14316 349 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 ACPPP15309 386 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 DTYMKP23919 212 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 CPOXP36551 454 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 MLLT10P55197 1068 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 GRM2Q14416 872 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 STEAP3Q658P3 488 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 TTLL10Q6ZVT0 673 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 SAMD7Q7Z3H4 446 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 MDGA2Q7Z553 956 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 ZFP41Q8N8Y5 198 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms