RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SMCO4Q9NRQ5 59 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 DNAJB11Q9UBS4 358 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 OTOFQ9HC10 1997 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 TMEM129A0AVI4 362 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 ANKRD61A6NGH8 418 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 A6NLC8 198 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 H7C0S8 307 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 AP4M1O00189 453 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 SNAPC5O75971 98 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 UBL3O95164 117 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 CCR8P51685 355 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 STARD6P59095 220 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 SEMG2Q02383 582 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 SCAPQ12770 1279 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 DDX39BQ13838 428 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 COX20Q5RI15 118 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 HACD4Q5VWC8 232 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 KIAA1161Q6NSJ0 714 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 POMZP3Q6PJE2 187 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF852Q6ZMS4 543 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 OR9A2Q8NGT5 310 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 LRIG1Q96JA1 1093 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 LCORQ96JN0 433 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 NUDT4Q9NZJ9 180 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 hCG_1809904A0A1W2PP81 198 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 A0A1W2PR64 198 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 A0A1W2PRV1 198 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 H7C1Q1 480 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 SOX15O60248 233 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 MTNR1AP48039 350 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 MMP15P51511 669 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 PITPNAQ00169 270 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 COTL1Q14019 142 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 PCBP2Q15366 365 aaKnown RBP eCLIP11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 OCLNQ16625 522 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 LINC00303Q3SY05 128 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 FBXO47Q5MNV8 452 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 MARC1Q5VT66 337 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 PAPD4Q6PIY7 484 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 TMEM200AQ86VY9 491 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 OR6V1Q8N148 313 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 OR4K2Q8NGD2 314 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 VOPP1Q96AW1 172 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 ORAI1Q96D31 301 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 SMIM14Q96QK8 99 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 PCYT2Q99447 389 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 CACYBPQ9HB71 228 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 RPS10P5Q9NQ39 176 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 ELOVL2Q9NXB9 296 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 OR10H2O60403 315 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 C22orf31O95567 290 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 PRPS2P11908 318 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 MGMTP16455 207 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 XCR1P46094 333 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF140P52738 457 aaPredicted RBP11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 AP3S2P59780 193 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 SURF2Q15527 256 aaPredicted RBP11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 DCST1Q5T197 706 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 TRIM46Q7Z4K8 759 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 TPRA1Q86W33 373 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 CD200R1Q8TD46 325 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 THEM6Q8WUY1 208 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 SORCS1Q8WY21 1168 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 IMP4Q96G21 291 aaKnown RBP11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 SLC2A13Q96QE2 648 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 POT1Q9NUX5 634 aa11.27□□□□□ -0.6
LIMCH1-213ENST00000511496 GPR182O15218 404 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 MBTPS2O43462 519 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 C6orf47O95873 294 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 F2RL1P55085 397 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 HTRA4P83105 476 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 SCARB2Q14108 478 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 GAMTQ14353 236 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 OR8G1Q15617 311 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 C12orf73Q69YU5 71 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 TCEAL6Q6IPX3 200 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 MBOAT1Q6ZNC8 495 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 TMPRSS11BQ86T26 416 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 PRSS58Q8IYP2 241 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 LAT2Q9GZY6 243 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 SMOC1Q9H4F8 434 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 KLK11Q9UBX7 282 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 CBLCQ9ULV8 474 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 ENPP4Q9Y6X5 453 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 ADAMTSL1Q8N6G6 1762 aa11.27□□□□□ -0.61
LIMCH1-213ENST00000511496 TAPBPO15533 448 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 GPR39O43194 453 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 EFCAB14O75071 495 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 IFNW1P05000 195 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 SERPIND1P05546 499 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 PTHLHP12272 177 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 GABRR2P28476 465 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 AVPR2P30518 371 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 THBS2P35442 1172 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 ARHGEF7Q14155 803 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 PPA1Q15181 289 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 RNLSQ5VYX0 342 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 PIANPQ8IYJ0 282 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 HJURPQ8NCD3 748 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 NUBPLQ8TB37 319 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms