RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 VSX2P58304 361 aaPredicted RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 LSM11P83369 360 aaKnown RBP eCLIP11.13□□□□□ -0.63
NUP54-202ENST00000502850 MAP4K2Q12851 820 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 EIF2B5Q13144 721 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 OR1Q1Q15612 314 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 SLC30A6Q6NXT4 461 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 CXXC5Q7LFL8 322 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 DGLUCYQ7Z3D6 616 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 GRAMD2AQ8IUY3 354 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 GALNT12Q8IXK2 581 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 C19orf47Q8N9M1 422 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 KCNS3Q9BQ31 491 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 LMF2Q9BU23 707 aaKnown RBP11.13□□□□□ -0.63
NUP54-202ENST00000502850 PRR14Q9BWN1 585 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 SNTG1Q9NSN8 517 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 GPR52Q9Y2T5 361 aa11.13□□□□□ -0.63
NUP54-202ENST00000502850 MUC6Q6W4X9 2439 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 F5P12259 2224 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 TRDV1A0A1B0GX56 115 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 NARSO43776 548 aaKnown RBP11.12□□□□□ -0.63
NUP54-202ENST00000502850 HCN1O60741 890 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 LDB3O75112 727 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 CDRT1O95170 752 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 THY1P04216 161 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 HLA-DPB1P04440 258 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 LIMS3P0CW19 117 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 LIMS4P0CW20 117 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 RNH1P13489 461 aaKnown RBP11.12□□□□□ -0.63
NUP54-202ENST00000502850 PVRP15151 417 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 LSSP48449 732 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 CTBP2P56545 445 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 PSPHP78330 225 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 GPR50Q13585 617 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 AMZ1Q400G9 498 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 FLYWCH1Q4VC44 716 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 CCNJQ5T5M9 372 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 DDI2Q5TDH0 399 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 CD200R1LQ6Q8B3 271 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 PAQR6Q6TCH4 344 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 TMPRSS11FQ6ZWK6 438 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 SNX29P2Q8IUI4 249 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 ZNF595Q8IYB9 648 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 SLC44A3Q8N4M1 653 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 ZBTB8BQ8NAP8 495 aaPredicted RBP11.12□□□□□ -0.63
NUP54-202ENST00000502850 ZDHHC1Q8WTX9 485 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 OIT3Q8WWZ8 545 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 KIAA1143Q96AT1 154 aaPredicted RBP11.12□□□□□ -0.63
NUP54-202ENST00000502850 C1GALT1C1Q96EU7 318 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 KLHDC7BQ96G42 594 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 LRFN5Q96NI6 719 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 PRSS27Q9BQR3 290 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 PELOQ9BRX2 385 aaKnown RBP11.12□□□□□ -0.63
NUP54-202ENST00000502850 TRIM2Q9C040 744 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 KLHL25Q9H0H3 589 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 OR52D1Q9H346 318 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 UBQLN3Q9H347 655 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 UCK1Q9HA47 277 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 SIDT1Q9NXL6 827 aaKnown RBP11.12□□□□□ -0.63
NUP54-202ENST00000502850 TNFRSF10DQ9UBN6 386 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 ZNF223Q9UK11 482 aaPredicted RBP11.12□□□□□ -0.63
NUP54-202ENST00000502850 POLHQ9Y253 713 aa11.12□□□□□ -0.63
NUP54-202ENST00000502850 MRPS2Q9Y399 296 aaKnown RBP11.12□□□□□ -0.63
NUP54-202ENST00000502850 ARHGEF17Q96PE2 2063 aaPredicted RBP11.12□□□□□ -0.63
NUP54-202ENST00000502850 GOLGA4Q13439 2230 aaKnown RBP11.11□□□□□ -0.63
NUP54-202ENST00000502850 SLC22A31A6NKX4 558 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 CHP2O43745 196 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 PIP5K1CO60331 668 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 ZNF217O75362 1048 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 IMPDH2P12268 514 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 IFI30P13284 250 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 DRD5P21918 477 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 TNFSF8P32971 234 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 GABRA3P34903 492 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 SEPHS1P49903 392 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 HOXC5Q00444 222 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 ID2Q02363 134 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 MGAT2Q10469 447 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 BIKQ13323 160 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 FZD2Q14332 565 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 CRTC2Q53ET0 693 aaPredicted RBP11.11□□□□□ -0.63
NUP54-202ENST00000502850 GARNL3Q5VVW2 1013 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 ZNF550Q7Z398 422 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 CMIPQ8IY22 773 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 UBALD2Q8IYN6 164 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 CADM3Q8N126 398 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 LNX2Q8N448 690 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 PATE1Q8WXA2 126 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 TOE1Q96GM8 510 aaKnown RBP11.11□□□□□ -0.63
NUP54-202ENST00000502850 TCTN2Q96GX1 697 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 TXNDC15Q96J42 360 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 SAMD8Q96LT4 415 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 FAM210AQ96ND0 272 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.11□□□□□ -0.63
NUP54-202ENST00000502850 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.11□□□□□ -0.63
NUP54-202ENST00000502850 ASB6Q9NWX5 421 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 IRAK4Q9NWZ3 460 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 PAIP2BQ9ULR5 123 aaKnown RBP11.11□□□□□ -0.63
NUP54-202ENST00000502850 CYP8B1Q9UNU6 501 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 CARD8Q9Y2G2 431 aa11.11□□□□□ -0.63
NUP54-202ENST00000502850 CAB39Q9Y376 341 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms