RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ZNF627Q7L945 461 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 SAP130Q9H0E3 1048 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 SLC6A17Q9H1V8 727 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 STARD5Q9NSY2 213 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 MUTYHQ9UIF7 546 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 B4DXG7 233 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 GASTP01350 101 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF888P0CJ79 500 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 RNH1P13489 461 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 CEBPGP53567 150 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 PSPHP78330 225 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 TMEM69Q5SWH9 247 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 SLC29A4Q7RTT9 530 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 ADIPOR2Q86V24 386 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 AVL9Q8NBF6 648 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 ZFYVE21Q9BQ24 234 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 LGR4Q9BXB1 951 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF436Q9C0F3 470 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 PLEKHA6Q9Y2H5 1048 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 FAM227AF5H4B4 570 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 H3BNC9 293 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 RAB3BP20337 219 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 SOX2P48431 317 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 NRG3P56975 720 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 ERVK-25P63136 954 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 ARHGAP19Q14CB8 494 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 NUP54Q7Z3B4 507 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 BCDIN3DQ7Z5W3 292 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 CDCA3Q99618 268 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 COMMD4Q9H0A8 199 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 SERTAD3Q9UJW9 196 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 A0A1B0GVT2 93 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 PRODHO43272 600 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 SLC43A1O75387 559 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 RPS25P62851 125 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF77Q15935 545 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 BAK1Q16611 211 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 ODF4Q2M2E3 257 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 C6orf132Q5T0Z8 1188 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 CLDN22Q8N7P3 220 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 TANKQ92844 425 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 METTL17Q9H7H0 456 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 PDE7BQ9NP56 450 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 RASD1Q9Y272 281 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 PCDHGB7Q9Y5F8 929 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 TPPPO94811 219 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 SLCO2B1O94956 709 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 B3GALT4O96024 378 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 IFITM3Q01628 133 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 SEC23BQ15437 767 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 GGTA1PQ4G0N0 100 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 FAM209AQ5JX71 171 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 PRSS36Q5K4E3 855 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 PLA2G15Q8NCC3 412 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 OR2L5Q8NG80 312 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 THAP3Q8WTV1 239 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 VNN3Q9NY84 501 aa15.31■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF823P16415 610 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 ATP5A1P25705 553 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 HENMT1Q5T8I9 393 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 ZC3H14Q6PJT7 736 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 TTLL10Q6ZVT0 673 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 GID4Q8IVV7 300 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 FANK1Q8TC84 345 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 UBTD2Q8WUN7 234 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 FAM46AQ96IP4 442 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 TRIM2Q9C040 744 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 CNIH4Q9P003 139 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 MTRF1O75570 445 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 RBBP9O75884 186 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 GNALP38405 381 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 SYPL1Q16563 259 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 BOLLQ8N9W6 283 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 C15orf40Q8WUR7 153 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 RLIMQ9NVW2 624 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 C17orf113A0A1B0GUU1 675 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 KIAA0355O15063 1070 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 RENP00797 406 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 PTPN6P29350 595 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 ASAH1Q13510 395 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 GRK1Q15835 563 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 ALKAL2Q6UX46 152 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 NRMQ8IXM6 262 aa15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 METTL2AQ96IZ6 378 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-209ENST00000494080 SSX4O60224 188 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 CLEC3AO75596 197 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 SNAPC5O75971 98 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 HRGP04196 525 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 HIST1H1TP22492 207 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 TGM4P49221 684 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 GFOD2Q3B7J2 385 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 SLC25A24Q6NUK1 477 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 PLBD1Q6P4A8 553 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 KLHL24Q6TFL4 600 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 OR8K3Q8NH51 312 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 OR5K2Q8NHB8 316 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 TMEM121BQ9BXQ6 578 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 C8orf33Q9H7E9 229 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 CENPMQ9NSP4 180 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 SNX11Q9Y5W9 270 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms