RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SF3A2Q15428 464 aaKnown RBP10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CDKN3Q16667 212 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 C1orf53Q5VUE5 145 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HLA-DQA1Q5Y7H0 255 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TSSK4Q6SA08 328 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 B3GLCTQ6Y288 498 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HSDL2Q6YN16 418 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GDPGP1Q6ZNW5 385 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TRIM46Q7Z4K8 759 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SAMD12Q8N8I0 201 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR5K2Q8NHB8 316 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RNASE11Q8TAA1 199 aaKnown RBP10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CCDC115Q96NT0 180 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PRMT8Q9NR22 394 aaPredicted RBP10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TAS2R16Q9NYV7 291 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ATG4BQ9Y4P1 393 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KLK4Q9Y5K2 254 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ARHGAP33O14559 1287 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RDH16O75452 317 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HLA-DPB1P04440 258 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KCNC3Q14003 757 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KLHL22Q53GT1 634 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZBTB37Q5TC79 503 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NKAIN2Q5VXU1 208 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CPZQ66K79 652 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC25A25Q6KCM7 469 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 REEP3Q6NUK4 255 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC9B2Q86UD5 537 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DENND6BQ8NEG7 585 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NEIL3Q8TAT5 605 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FANK1Q8TC84 345 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DCLRE1CQ96SD1 692 aaKnown RBP10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PCBD2Q9H0N5 130 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KCNN2Q9H2S1 579 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF385DQ9H6B1 395 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CXorf36Q9H7Y0 433 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SPTAN1Q13813 2472 aaKnown RBP10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 IRGMA1A4Y4 181 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SH3D21A4FU49 640 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 C2CD4DB7Z1M9 353 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 H2AFB2P0C5Z0 115 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CELP19835 753 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC6A12P48065 614 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DAPP51397 102 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CRISP3P54108 245 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SMIM11AP58511 58 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PRDX1Q06830 199 aaKnown RBP10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LARS2Q15031 903 aaKnown RBP10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TOMM20Q15388 145 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 BAK1Q16611 211 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZMAT1Q5H9K5 638 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FIGLAQ6QHK4 219 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HORMAD2Q8N7B1 307 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MOSPD2Q8NHP6 518 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FBXW5Q969U6 566 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NELL2Q99435 816 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MGAT4CQ9UBM8 478 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CCDC88CQ9P219 2028 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DOCK9Q9BZ29 2069 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LRRC37A2A6NM11 1700 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 A0A1W2PS29 197 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CDC14CA4D256 554 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LEUTXA8MZ59 168 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PCDH17O14917 1159 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TMPRSS11DO60235 418 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ALDOBP05062 364 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GKN3PP0CG01 181 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PRG2P13727 222 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HLA-DMAP28067 261 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RORAP35398 523 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GPR50Q13585 617 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GPR18Q14330 331 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 AANATQ16613 207 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 BCDIN3DQ7Z5W3 292 aaKnown RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZFP41Q8N8Y5 198 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LHFPL5Q8TAF8 219 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DPYSL5Q9BPU6 564 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PELOQ9BRX2 385 aaKnown RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TNFRSF10DQ9UBN6 386 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF175Q9Y473 711 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 A0A1B0GVI7 797 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CELA2BP08218 269 aaPredicted RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RAB12Q6IQ22 244 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TTLL10Q6ZVT0 673 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LINGO2Q7L985 606 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ASPGQ86U10 573 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GPALPP1Q8IXQ4 340 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ETFBKMTQ8IXQ9 262 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DNAJC22Q8N4W6 341 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 L3MBTL4Q8NA19 623 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NUP43Q8NFH3 380 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR5M11Q96RB7 305 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TSSK6Q9BXA6 273 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ALOXE3Q9BYJ1 711 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZFR2Q9UPR6 939 aaKnown RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ARHGEF17Q96PE2 2063 aaPredicted RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 A0A075B6Q4 140 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TRAV20A0A0B4J274 112 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC9B1P1A6NJY1 282 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FAM25EA8MYX2 175 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms