RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	OIT3	Q8WWZ8	545 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	PIK3R3	Q92569	461 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	VPS33A	Q96AX1	596 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	TMCO6	Q96DC7	493 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	WDR89	Q96FK6	387 aa	Predicted RBP	5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	C16orf58	Q96GQ5	468 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	FAM46A	Q96IP4	442 aa	Known RBP	5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	RHOV	Q96L33	236 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	ZNF597	Q96LX8	424 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	GNRHR2	Q96P88	292 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	MS4A4E	Q96PG1	132 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	ADO	Q96SZ5	270 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	TIMP4	Q99727	224 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	DOHH	Q9BU89	302 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	DUSP26	Q9BV47	211 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	DEFB127	Q9H1M4	99 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	CENPH	Q9H3R5	247 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	CCDC134	Q9H6E4	229 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	C3orf14	Q9HBI5	128 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	ATAD3A	Q9NVI7	634 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	NKIRAS1	Q9NYS0	192 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	SH3BP4	Q9P0V3	963 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	PLEKHB1	Q9UF11	243 aa	Predicted RBP	5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	BTNL2	Q9UIR0	455 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	FBXL2	Q9UKC9	423 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	BOK	Q9UMX3	212 aa	Predicted RBP	5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	EIF3L	Q9Y262	564 aa	Known RBP	5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	KLF2	Q9Y5W3	355 aa	Predicted RBP	5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	WIF1	Q9Y5W5	379 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	CREBBP	Q92793	2442 aa		5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	PRRC2A	P48634	2157 aa	Known RBP	5.19	□□□□□ -1.58
CUX1-208	ENST00000485792	ARID1A	O14497	2285 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	TRBV5-3	A0A0A0MS03	114 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	TRGV5	A0A0B4J1U4	118 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	NPIPA5	A0A0B4J1W7	369 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	GOLGA8Q	A0A0J9YX86	632 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	C7orf72	A4D263	438 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	GOLGA8O	A6NCC3	632 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	AHRR	A9YTQ3	701 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792		E9PBE3	544 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	NPIPA7	E9PJI5	369 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	GOLGA8N	F8WBI6	632 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792		H0YC42	278 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	ACOT7	O00154	380 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	CCL21	O00585	134 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	WDR1	O75083	606 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	REM1	O75628	298 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	NTN1	O95631	604 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	C6orf47	O95873	294 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	EPPIN	O95925	133 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	ACTL6A	O96019	429 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	PGR	P06401	933 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	UQCRH	P07919	91 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	ZCCHC18	P0CG32	403 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	NPIPA8	P0DM63	369 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	IDO1	P14902	403 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	DDX5	P17844	614 aa	Known RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	IL11	P20809	199 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	CHM	P24386	653 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	SRD5A2	P31213	254 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	GABRA3	P34903	492 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	EVI2B	P34910	448 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	PTGER4	P35408	488 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	TIMP3	P35625	211 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	KIR3DL1	P43629	444 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	CCT3	P49368	545 aa	Known RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	LHX2	P50458	406 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	CLNS1A	P54105	237 aa	Known RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	CASP9	P55211	416 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	TPD52	P55327	224 aa	Predicted RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	PER3	P56645	1201 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	UFM1	P61960	85 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	KCNJ2	P63252	427 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	IRX1	P78414	480 aa	Predicted RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	RBPJ	Q06330	500 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	LRRC74A	Q0VAA2	488 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	HSPB3	Q12988	150 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	BCL2A1	Q16548	175 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	DECR1	Q16698	335 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	GSTA3	Q16772	222 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	ZNF630	Q2M218	657 aa	Predicted RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	NDUFAF6	Q330K2	333 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	VPS26B	Q4G0F5	336 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	PDCD4	Q53EL6	469 aa	Known RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	KLHL26	Q53HC5	615 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	SPANXN4	Q5MJ08	99 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	CCNJ	Q5T5M9	372 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	C6orf163	Q5TEZ5	329 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	SAXO2	Q658L1	398 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	MSANTD1	Q6ZTZ1	278 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	MAMDC2	Q7Z304	686 aa	Predicted RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	HMGN2P46	Q86SG4	172 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	FJX1	Q86VR8	437 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	LIX1L	Q8IVB5	337 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	FAM71C	Q8NEG0	241 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	FAM83F	Q8NEG4	500 aa	Predicted RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	OR2M3	Q8NG83	312 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	OR56A1	Q8NGH5	318 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	OR1J4	Q8NGS1	313 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	OR5AK3P	Q8NH89	298 aa		5.18	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms