RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 ZNF615Q8N8J6 731 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 RCBTB1Q8NDN9 531 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 PIGXQ8TBF5 258 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 TMEM255BQ8WV15 326 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 ACOT11Q8WXI4 607 aaPredicted RBP16.9■□□□□ 0.3
COL9A3-205ENST00000466192 EDAQ92838 391 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 ZNF501Q96CX3 271 aaPredicted RBP16.9■□□□□ 0.3
COL9A3-205ENST00000466192 LGALS12Q96DT0 336 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 NDC1Q9BTX1 674 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 ZNF768Q9H5H4 540 aaKnown RBP16.9■□□□□ 0.3
COL9A3-205ENST00000466192 GMEB2Q9UKD1 530 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 SIGLEC6O43699 453 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 CNOT3O75175 753 aaKnown RBP16.89■□□□□ 0.3
COL9A3-205ENST00000466192 CT45A8P0DMV1 189 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 CT45A9P0DMV2 189 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 OMPP47874 163 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 PCYT1AP49585 367 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 TSPAN31Q12999 210 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 NNATQ16517 81 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 DECR1Q16698 335 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 CT45A2Q5DJT8 189 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 ZNF554Q86TJ5 538 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 C1orf210Q8IVY1 113 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 NRMQ8IXM6 262 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 ZNF578Q96N58 590 aaPredicted RBP16.89■□□□□ 0.3
COL9A3-205ENST00000466192 NECAB3Q96P71 396 aaPredicted RBP16.89■□□□□ 0.3
COL9A3-205ENST00000466192 CDCA4Q9BXL8 241 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 PLGRKTQ9HBL7 147 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 FGF21Q9NSA1 209 aa16.89■□□□□ 0.3
COL9A3-205ENST00000466192 EFCAB9A8MZ26 197 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 INHBBP09529 407 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 PNLIPP16233 465 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 GALNSP34059 522 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 GPR4P46093 362 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 SMSP52788 366 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 NR0B2Q15466 257 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 MED22Q15528 200 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 ARMCX4Q5H9R4 360 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 PDZK1Q5T2W1 519 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 TMEM71Q6P5X7 295 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 MED25Q71SY5 747 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 SLCO6A1Q86UG4 719 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 RANBP3LQ86VV4 465 aaPredicted RBP16.89■□□□□ 0.29
COL9A3-205ENST00000466192 WDR36Q8NI36 951 aaKnown RBP16.89■□□□□ 0.29
COL9A3-205ENST00000466192 TEX47Q8TBZ9 253 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 ARSGQ96EG1 525 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 OR1F2PQ96R84 312 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 OR5M11Q96RB7 305 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 POLDIP3Q9BY77 421 aaKnown RBP16.89■□□□□ 0.29
COL9A3-205ENST00000466192 TBCCD1Q9NVR7 557 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 SERTAD3Q9UJW9 196 aa16.89■□□□□ 0.29
COL9A3-205ENST00000466192 C17orf105B2RV13 164 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 PIP5K1CO60331 668 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 CFIP05156 583 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 PIPP12273 146 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-205ENST00000466192 BMXP51813 675 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 EFNA3P52797 238 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 DSG2Q14126 1118 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 SNAPC1Q16533 368 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 MOGQ16653 247 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 CLEC12AQ5QGZ9 265 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 MFSD4BQ5TF39 518 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 CROCCP3Q8IVE0 287 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 OR8D4Q8NGM9 314 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 PTPMT1Q8WUK0 201 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-205ENST00000466192 TSLPQ969D9 159 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 CRELD1Q96HD1 420 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 LRR1Q96L50 414 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 PRSS27Q9BQR3 290 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 PELOQ9BRX2 385 aaKnown RBP16.88■□□□□ 0.29
COL9A3-205ENST00000466192 TSSK6Q9BXA6 273 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 MMACHCQ9Y4U1 282 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 HEATR5AQ86XA9 2040 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 NCOR1O75376 2440 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 DSCR3O14972 297 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 AIREO43918 545 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 GUSBP08236 651 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 DBTP11182 482 aaKnown RBP16.88■□□□□ 0.29
COL9A3-205ENST00000466192 GADD45AP24522 165 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 ZNF91Q05481 1191 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 BIKQ13323 160 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 MINDY4Q4G0A6 757 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 C1orf189Q5VU69 101 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 SLC27A4Q6P1M0 643 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 ZNF614Q8N883 585 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 C9orf43Q8TAL5 461 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-205ENST00000466192 CNOT9Q92600 299 aaKnown RBP16.88■□□□□ 0.29
COL9A3-205ENST00000466192 ABTB1Q969K4 478 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-205ENST00000466192 RNF31Q96EP0 1072 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 GAREM1Q9H706 876 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 ZNF304Q9HCX3 659 aa16.88■□□□□ 0.29
COL9A3-205ENST00000466192 PNO1Q9NRX1 252 aaKnown RBP16.88■□□□□ 0.29
COL9A3-205ENST00000466192 RPL36Q9Y3U8 105 aaKnown RBP16.88■□□□□ 0.29
COL9A3-205ENST00000466192 COL5A1P20908 1838 aaPredicted RBP16.87■□□□□ 0.29
COL9A3-205ENST00000466192 IGKV3D-11A0A0A0MRZ8 115 aa16.87■□□□□ 0.29
COL9A3-205ENST00000466192 A0A1W2PQM1 296 aa16.87■□□□□ 0.29
COL9A3-205ENST00000466192 HNRNPCP07910 306 aaKnown RBP eCLIP16.87■□□□□ 0.291e-8■■■□□ 15.9
COL9A3-205ENST00000466192 DRD5P21918 477 aa16.87■□□□□ 0.29
COL9A3-205ENST00000466192 FBLP22087 321 aaKnown RBP16.87■□□□□ 0.29
COL9A3-205ENST00000466192 CLK1P49759 484 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms