RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PEX14O75381 377 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 SPDEFO95238 335 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 TBX6O95947 436 aaPredicted RBP10.93□□□□□ -0.66
CPSF3-202ENST00000460593 FNTBP49356 437 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 OR12D2P58182 307 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 SMIM11AP58511 58 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 FUT5Q11128 374 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 PCDHB16Q9NRJ7 776 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 HPF1Q9NWY4 346 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 SPTBP11277 2137 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 DNASE2O00115 360 aaPredicted RBP10.92□□□□□ -0.66
CPSF3-202ENST00000460593 PGRMC2O15173 223 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 SOCS5O75159 536 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 CKMP06732 381 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 ASGR1P07306 291 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 F8A1P23610 371 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 B2MP61769 119 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 KLF9Q13886 244 aaPredicted RBP10.92□□□□□ -0.66
CPSF3-202ENST00000460593 HLXQ14774 488 aaPredicted RBP10.92□□□□□ -0.66
CPSF3-202ENST00000460593 LDLRAD1Q5T700 205 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 ZNF454Q8N9F8 522 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 ABHD4Q8TB40 342 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 WNT2BQ93097 391 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 TM4SF18Q96CE8 201 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 PRRC1Q96M27 445 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 DERL3Q96Q80 235 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 ARL6Q9H0F7 186 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 LDAHQ9H6V9 325 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 PFDN2Q9UHV9 154 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 PLSCR5A0PG75 271 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 DAPL1A0PJW8 107 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 OR2W5A6NFC9 320 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 TMPRSS11DO60235 418 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 SUSD5O60279 629 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 KCNJ13O60928 360 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 ADH7P40394 386 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 BAMBIQ13145 260 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 CXXC5Q7LFL8 322 aaKnown RBP10.92□□□□□ -0.66
CPSF3-202ENST00000460593 CMTM8Q8IZV2 173 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 CYB561A3Q8NBI2 242 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 BVESQ8NE79 360 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 OR5J2Q8NH18 312 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 OR56B4Q8NH76 319 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 UPF1Q92900 1129 aaKnown RBP eCLIP10.92□□□□□ -0.66
CPSF3-202ENST00000460593 SLC35G5Q96KT7 338 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.92□□□□□ -0.66
CPSF3-202ENST00000460593 FKRPQ9H9S5 495 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 PTTG3PQ9NZH4 202 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 KLHL42Q9P2K6 505 aa10.92□□□□□ -0.66
CPSF3-202ENST00000460593 A8MXK9 166 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 MCRIP1C9JLW8 97 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 LRRN3E7EW58 273 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ERAL1O75616 437 aaKnown RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 IGHA1P01876 353 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 PCSK2P16519 638 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 NFYAP23511 347 aaPredicted RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 PSMA6P60900 246 aaKnown RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 HYAL4Q2M3T9 481 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ACSM3Q53FZ2 586 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 STPG1Q5TH74 334 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 HIST2H2AA3Q6FI13 130 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 TMEM88Q6PEY1 159 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 CD300LDQ6UXZ3 194 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 FGD2Q7Z6J4 655 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 SLC9B2Q86UD5 537 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 DOK4Q8TEW6 326 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 C4orf36Q96KX1 117 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 TRMT61BQ9BVS5 477 aaKnown RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 LRRN3Q9H3W5 708 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 EVA1AQ9H8M9 152 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 P2RX2Q9UBL9 471 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ZNF98A6NK75 572 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 C1orf105O95561 183 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 PAICSP22234 425 aaKnown RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 PSMB5P28074 263 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 GCGRP47871 477 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 OMPP47874 163 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ZNF169Q14929 603 aaPredicted RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 RPE65Q16518 533 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 NDUFA9Q16795 377 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 PGGHGQ32M88 737 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 HES5Q5TA89 166 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 SLC6A19Q695T7 634 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 NXPE4Q6UWF7 544 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 APOOLQ6UXV4 268 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 SLC24A5Q71RS6 500 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 SSX6Q7RTT6 188 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 OVCH2Q7RTZ1 564 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ACBD7Q8N6N7 88 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 OR5M1Q8NGP8 315 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 OR52N1Q8NH53 320 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 OR52I2Q8NH67 350 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ZNF671Q8TAW3 534 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 LGALS14Q8TCE9 139 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 GNPDA2Q8TDQ7 276 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 PXYLP1Q8TE99 480 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 SORCS1Q8WY21 1168 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 OR5P2Q8WZ92 322 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ATOH1Q92858 354 aaPredicted RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 RFKQ969G6 155 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms