RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 COPS3Q9UNS2 423 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 SLC45A1Q9Y2W3 748 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 CASP3P42574 277 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 DCAF7P61962 342 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 CPNE8Q86YQ8 564 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZNF695Q8IW36 515 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 KDF1Q8NAX2 398 aaPredicted RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 GPR26Q8NDV2 337 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SLC25A36Q96CQ1 311 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZNF395Q9H8N7 513 aaPredicted RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 SPHK1Q9NYA1 384 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 OR2T7P0C7T2 308 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 TCTAP57738 103 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 PTPRCAPQ14761 206 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 OPN5Q6U736 354 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SPRED1Q7Z699 444 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 PRSS35Q8N3Z0 413 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 MTMR14Q8NCE2 650 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 FAM156AQ8NDB6 213 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 OR5D16Q8NGK9 328 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 OR2T27Q8NH04 317 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ELP3Q9H9T3 547 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ATP13A2Q9NQ11 1180 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 A0A1W2PQ09 198 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZNF850A8MQ14 1090 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SUB1P53999 127 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS53-204ENST00000437048 RPS3AP61247 264 aaKnown RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 PLGLB1Q02325 96 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ILKQ13418 452 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 USP51Q70EK9 711 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 STPG2Q8N412 459 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 OR10K1Q8NGX5 313 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZNF778Q96MU6 729 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 PELI2Q9HAT8 420 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZNF275Q9NSD4 429 aaPredicted RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 C2orf92A0A1B0GVN3 265 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 MGMTP16455 207 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZP3P21754 424 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 CLEC12AQ5QGZ9 265 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 NOL9Q5SY16 702 aaKnown RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 NXPE4Q6UWF7 544 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 EBF1Q9UH73 591 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 NUP188Q5SRE5 1749 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZNF638Q14966 1978 aaKnown RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 TMEM150BA6NC51 233 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SCGB1D1O95968 90 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 PNPP00491 289 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ALDOBP05062 364 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 PBX2P40425 430 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 EPHA5P54756 1037 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 BEND4Q6ZU67 534 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 KIAA0319LQ8IZA0 1049 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SGK3Q96BR1 496 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 NOX3Q9HBY0 568 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 AMBNQ9NP70 447 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 THSD1Q9NS62 852 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 A0A1B0GUH1 482 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 GPR155Q7Z3F1 870 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 MISPQ8IVT2 679 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 OR4K5Q8NGD3 323 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 CASTOR1Q8WTX7 329 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZNF251Q9BRH9 671 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 NMNAT2Q9BZQ4 307 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SLC2A4RGQ9NR83 387 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 GPR160Q9UJ42 338 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZNF225Q9UK10 706 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 PTHP01270 115 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 PSMB3P49720 205 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 CCR9P51686 369 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SEC61A1P61619 476 aaKnown RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 CDRT4Q8N9R6 151 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 THEM6Q8WUY1 208 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 NTMT1Q9BV86 223 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 C1QTNF2Q9BXJ5 285 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SCN3AQ9NY46 2000 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 IL1R2P27930 398 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 OPCMLQ14982 345 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 POU4F3Q15319 338 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 GLIS3Q8NEA6 775 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 FRZBQ92765 325 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 HAS2Q92819 552 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 XYLT2Q9H1B5 865 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SACM1LQ9NTJ5 587 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 YARS2Q9Y2Z4 477 aaKnown RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 XKRY2A2RUG3 117 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 CBY3A6NI87 242 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 TSPAN6O43657 245 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 CLLU1Q5K131 121 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ERN2Q76MJ5 926 aaKnown RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 PIWIL3Q7Z3Z3 882 aaKnown RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZNF366Q8N895 744 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 OR9A2Q8NGT5 310 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SYT17Q9BSW7 474 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 BCO1Q9HAY6 547 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ZNF281Q9Y2X9 895 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 METTL15A6NJ78 407 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ALDOAP04075 364 aaKnown RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 OR5W2Q8NH69 310 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 VPS25Q9BRG1 176 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 OR2S2Q9NQN1 319 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms