RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 MUL1Q969V5 352 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 NUDT9Q9BW91 350 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 POLR2J3Q9H1A7 115 aaKnown RBP19.5■□□□□ 0.71
PTPRF-207ENST00000436724 NXF5Q9H1B4 397 aaKnown RBP19.5■□□□□ 0.71
PTPRF-207ENST00000436724 SLC7A7Q9UM01 511 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 IGHV3-20A0A0C4DH32 117 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 MAGEB3O15480 346 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 ADAM11O75078 769 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 CSTF2P33240 577 aaKnown RBP eCLIP19.5■□□□□ 0.71
PTPRF-207ENST00000436724 RANBP1P43487 201 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 LCN10Q6JVE6 187 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 TMEM255BQ8WV15 326 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 DGCR6LQ9BY27 220 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 NRSN2Q9GZP1 204 aa19.5■□□□□ 0.71
PTPRF-207ENST00000436724 AKIRIN1Q9H9L7 192 aaPredicted RBP19.5■□□□□ 0.71
PTPRF-207ENST00000436724 DYRK3O43781 588 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 LDOC1O95751 146 aaPredicted RBP19.49■□□□□ 0.71
PTPRF-207ENST00000436724 OSMP13725 252 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 ZNF829Q3KNS6 432 aaPredicted RBP19.49■□□□□ 0.71
PTPRF-207ENST00000436724 ZNF730Q6ZMV8 503 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 PRICKLE2Q7Z3G6 844 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 RANBP3LQ86VV4 465 aaPredicted RBP19.49■□□□□ 0.71
PTPRF-207ENST00000436724 CCDC103Q8IW40 242 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 PMM1Q92871 262 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 GAL3ST4Q96RP7 486 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 NODALQ96S42 347 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 CDC14CA4D256 554 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 H3BN98 237 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 TP53P04637 393 aaPredicted RBP19.49■□□□□ 0.71
PTPRF-207ENST00000436724 CCDC159P0C7I6 412 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 CCL4P13236 92 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 RORAP35398 523 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 KRT20P35900 424 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 OCA2Q04671 838 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 TMED1Q13445 227 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 MOGQ16653 247 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 C1orf94Q6P1W5 598 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 ZNF566Q969W8 418 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 SLC46A1Q96NT5 459 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 G6PC3Q9BUM1 346 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 FUNDC2Q9BWH2 189 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 TGIF2Q9GZN2 237 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 C11orf16Q9NQ32 467 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 ZNF226Q9NYT6 803 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 FLRT3Q9NZU0 649 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 CNIH4Q9P003 139 aa19.49■□□□□ 0.71
PTPRF-207ENST00000436724 RALGAPA1Q6GYQ0 2036 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 IGLV3-12A0A075B6K2 115 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 ZAR1LA6NP61 321 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 NPIPB9F8W1W9 429 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 PFDN1O60925 122 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 OR5F1O95221 314 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 ITIH1P19827 911 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 DRD5P21918 477 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 IFNA8P32881 189 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 DCDP81605 110 aaKnown RBP19.48■□□□□ 0.71
PTPRF-207ENST00000436724 OR1Q1Q15612 314 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 NDUFAF6Q330K2 333 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 PLA2G2CQ5R387 149 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 ZNF385CQ66K41 422 aaPredicted RBP19.48■□□□□ 0.71
PTPRF-207ENST00000436724 DBX2Q6ZNG2 339 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 Q6ZNX1 250 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 C9orf40Q8IXQ3 194 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 KIF26BQ2KJY2 2108 aa19.48■□□□□ 0.71
PTPRF-207ENST00000436724 IDSB3KWA1 339 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 PIP5K1CO60331 668 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 INMTO95050 263 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 BCL10O95999 233 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 GP2P55259 537 aaKnown RBP19.47■□□□□ 0.71
PTPRF-207ENST00000436724 ZFP36L1Q07352 338 aaKnown RBP19.47■□□□□ 0.71
PTPRF-207ENST00000436724 SLC16A12Q6ZSM3 486 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 PRR22Q8IZ63 422 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 PLPP5Q8NEB5 264 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 NR4A3Q92570 626 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 PMEPA1Q969W9 287 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 FAM46AQ96IP4 442 aaKnown RBP19.47■□□□□ 0.71
PTPRF-207ENST00000436724 AMBNQ9NP70 447 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 RXFP3Q9NSD7 469 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 ENOPH1Q9UHY7 261 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 SNX5Q9Y5X3 404 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 CACNA1HO95180 2353 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 CNOT3O75175 753 aaKnown RBP19.47■□□□□ 0.71
PTPRF-207ENST00000436724 ZNF28P17035 718 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 PPICP45877 212 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 BMXP51813 675 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 ATP12AP54707 1039 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 ILKQ13418 452 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 AQP6Q13520 282 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 DESI1Q6ICB0 168 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 WDR88Q6ZMY6 472 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 RHOXF1Q8NHV9 184 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 RNF217Q8TC41 542 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 DAZLQ92904 295 aaKnown RBP19.47■□□□□ 0.71
PTPRF-207ENST00000436724 BORCS5Q969J3 196 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 ADIPOR1Q96A54 375 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 LOXL4Q96JB6 756 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 ARMC7Q9H6L4 198 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 DNAJB12Q9NXW2 375 aaKnown RBP19.47■□□□□ 0.71
PTPRF-207ENST00000436724 PCDHGA5Q9Y5G8 931 aa19.47■□□□□ 0.71
PTPRF-207ENST00000436724 MLLT10P55197 1068 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms