RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PRODHO43272 600 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 PRKYO43930 277 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 UBXN7O94888 489 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 EML2O95834 649 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 THBS1P07996 1170 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 IGFBP1P08833 259 aaPredicted RBP13.77□□□□□ -0.21
USP4-203ENST00000415188 ADRA2AP08913 450 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 UGT2B7P16662 529 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 AK4P27144 223 aaPredicted RBP13.77□□□□□ -0.21
USP4-203ENST00000415188 COPZ1P61923 177 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 GABREP78334 506 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 COL9A2Q14055 689 aaPredicted RBP13.77□□□□□ -0.21
USP4-203ENST00000415188 ARHGAP11BQ3KRB8 267 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 AGAP7PQ5VUJ5 663 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 FBXO42Q6P3S6 717 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 FIGLAQ6QHK4 219 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 PEX5LQ8IYB4 626 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 SLC34A3Q8N130 599 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 ZNF655Q8N720 491 aaPredicted RBP13.77□□□□□ -0.21
USP4-203ENST00000415188 CLDN22Q8N7P3 220 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 OR52P1PQ8NH57 321 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 ACOT11Q8WXI4 607 aaPredicted RBP13.77□□□□□ -0.21
USP4-203ENST00000415188 PMM1Q92871 262 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 OTUB1Q96FW1 271 aaPredicted RBP13.77□□□□□ -0.21
USP4-203ENST00000415188 ZNF582Q96NG8 517 aaPredicted RBP13.77□□□□□ -0.21
USP4-203ENST00000415188 BBC3Q96PG8 261 aaPredicted RBP13.77□□□□□ -0.21
USP4-203ENST00000415188 C6orf62Q9GZU0 229 aaPredicted RBP13.77□□□□□ -0.21
USP4-203ENST00000415188 SYNPO2LQ9H987 977 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 HHATLQ9HCP6 504 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 MED17Q9NVC6 651 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 NDUFB11Q9NX14 153 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 TESQ9UGI8 421 aaKnown RBP13.77□□□□□ -0.21
USP4-203ENST00000415188 PILRAQ9UKJ1 303 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 STUB1Q9UNE7 303 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 ZNF232Q9UNY5 417 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 KCNE3Q9Y6H6 103 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 SPACA6W5XKT8 324 aa13.77□□□□□ -0.21
USP4-203ENST00000415188 A0A087WUU8 490 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 A0A1W2PNU3 283 aaPredicted RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 LOC110117498-PIK3R3F6TDL0 507 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 ZSCAN9O15535 394 aaPredicted RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 TLX2O43763 284 aaPredicted RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 RASGRP1O95267 797 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 ACP2P11117 423 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 FPR3P25089 353 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 PSMA1P25786 263 aaKnown RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 RGS8P57771 180 aaPredicted RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 SRP54P61011 504 aaKnown RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 IFITM3Q01628 133 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 RAB40BQ12829 278 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 FOXD4Q12950 439 aaPredicted RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 LARS2Q15031 903 aaKnown RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 SNAPC1Q16533 368 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 MINDY4Q4G0A6 757 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 ZCCHC12Q6PEW1 402 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 ZNF730Q6ZMV8 503 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 LRRC69Q6ZNQ3 347 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 RRM2BQ7LG56 351 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 KCT2Q8NC54 265 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 JPH3Q8WXH2 748 aaPredicted RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 PIK3R3Q92569 461 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 OSTF1Q92882 214 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 SLC35A4Q96G79 324 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 CPNE5Q9HCH3 593 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 POT1Q9NUX5 634 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 CHCHD3Q9NX63 227 aaKnown RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 ACTR10Q9NZ32 417 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 KLHL3Q9UH77 587 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 DAPP1Q9UN19 280 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 ZNF443Q9Y2A4 671 aaPredicted RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 EXOSC1Q9Y3B2 195 aaKnown RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 SLC22A7Q9Y694 548 aa13.76□□□□□ -0.21
USP4-203ENST00000415188 MN1Q10571 1320 aaPredicted RBP13.76□□□□□ -0.21
USP4-203ENST00000415188 COL27A1Q8IZC6 1860 aaPredicted RBP13.75□□□□□ -0.21
USP4-203ENST00000415188 A0A087WV62 115 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 TMEM129A0AVI4 362 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 OR5K4A6NMS3 321 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 KDM4EB2RXH2 506 aaPredicted RBP13.75□□□□□ -0.21
USP4-203ENST00000415188 RRP8O43159 456 aaKnown RBP13.75□□□□□ -0.21
USP4-203ENST00000415188 GPX5O75715 221 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 SOX30O94993 753 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 AK1P00568 194 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 CTSEP14091 401 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 CPMP14384 443 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 MYL12AP19105 171 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 OMPP47874 163 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 BLKP51451 505 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 ILF3Q12906 894 aaKnown RBP eCLIP13.75□□□□□ -0.21
USP4-203ENST00000415188 ISXQ2M1V0 245 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 EXOSC6Q5RKV6 272 aaKnown RBP13.75□□□□□ -0.21
USP4-203ENST00000415188 FCRL6Q6DN72 434 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 FRRS1Q6ZNA5 592 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 PLEKHM3Q6ZWE6 761 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 VRK2Q86Y07 508 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 KIF18BQ86Y91 864 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 TRIM48Q8IWZ4 208 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 IQCF1Q8N6M8 205 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 OR7G2Q8NG99 324 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 OR52I1Q8NGK6 324 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 KAT2AQ92830 837 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms