RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ZNF595Q8IYB9 648 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 FKBP10Q96AY3 582 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 TRIM2Q9C040 744 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 CCDC86Q9H6F5 360 aaKnown RBP9.58□□□□□ -0.88
COL6A3-205ENST00000392004 FBXO8Q9NRD0 319 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 SDHAF3Q9NRP4 125 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 P4HTMQ9NXG6 502 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 CLDN24A6NM45 220 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 OR2J2O76002 312 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 FADS2O95864 444 aaKnown RBP9.58□□□□□ -0.88
COL6A3-205ENST00000392004 FURINP09958 794 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 MAP2K4P45985 399 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 GP2P55259 537 aaKnown RBP9.58□□□□□ -0.88
COL6A3-205ENST00000392004 CTF1Q16619 201 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF540Q8NDQ6 660 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 OR5K1Q8NHB7 308 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 TMCO6Q96DC7 493 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 IFT27Q9BW83 186 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 ACTRT3Q9BYD9 372 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 BHLHE41Q9C0J9 482 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-205ENST00000392004 DSN1Q9H410 356 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 NEK6Q9HC98 313 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 ERVK-18Q9QC07 812 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 PPT2Q9UMR5 302 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 TANC1Q9C0D5 1861 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 MIA3Q5JRA6 1907 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 TAF4O00268 1085 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 TEAD1P28347 426 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 FMO3P31513 532 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 KDELR2P33947 212 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 EMX1Q04741 257 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-205ENST00000392004 EXOC3L2Q2M3D2 409 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 TCTN3Q6NUS6 607 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 SLC48A1Q6P1K1 146 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 C3P1Q6ZMU1 363 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 MED25Q71SY5 747 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 TBX5Q99593 518 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 APOL4Q9BPW4 351 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 OSBPL10Q9BXB5 764 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 TP63Q9H3D4 680 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-205ENST00000392004 MYNNQ9NPC7 610 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 SERINC1Q9NRX5 453 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 NOX1Q9Y5S8 564 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 A0A096LPI6 279 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 GXYLT2A0PJZ3 443 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 XKRYO14609 159 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 NKX2-8O15522 239 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 RGS10O43665 173 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 HCN1O60741 890 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 TIAF1O95411 115 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 NSA2O95478 260 aaKnown RBP9.57□□□□□ -0.88
COL6A3-205ENST00000392004 CKMT1AP12532 417 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 IFI30P13284 250 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF28P17035 718 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 ID4P47928 161 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 NCS1P62166 190 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 IFITM3Q01628 133 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 IL18R1Q13478 541 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 SNAPC1Q16533 368 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 ADPRMQ3LIE5 342 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 SLC30A6Q6NXT4 461 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 UTS2BQ765I0 119 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 OR1N1Q8NGS0 311 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 RHOXF1Q8NHV9 184 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 CNIH3Q8TBE1 160 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 CHTF18Q8WVB6 975 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 CNRIP1Q96F85 164 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-205ENST00000392004 CEP19Q96LK0 163 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 AMDHD1Q96NU7 426 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 UTP23Q9BRU9 249 aaKnown RBP9.57□□□□□ -0.88
COL6A3-205ENST00000392004 VN1R1Q9GZP7 353 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 DEFB127Q9H1M4 99 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 NTN4Q9HB63 628 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 CCNB1IP1Q9NPC3 277 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 SERHLQ9NQF3 203 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 EFCAB9A8MZ26 197 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 SCELO95171 688 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 APOL3O95236 402 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 MED26O95402 600 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 RGNQ15493 299 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 CRB2Q5IJ48 1285 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 ENPP6Q6UWR7 440 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 HIPK1Q86Z02 1210 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 RIMKLAQ8IXN7 391 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 MFSD4AQ8N468 514 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 CDRT4Q8N9R6 151 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 OR4N2Q8NGD1 307 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 GTF2H4Q92759 462 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 TXNDC15Q96J42 360 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 MS4A4EQ96PG1 132 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 LHX9Q9NQ69 397 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 PAK1IP1Q9NWT1 392 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-205ENST00000392004 TVP23BQ9NYZ1 205 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 GMPPBQ9Y5P6 360 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 PMS2P1A4D2B8 440 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 UPK1BO75841 260 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 DBTP11182 482 aaKnown RBP9.57□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF181Q2M3W8 571 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 CTU2Q2VPK5 515 aaKnown RBP9.57□□□□□ -0.88
COL6A3-205ENST00000392004 PRICKLE2Q7Z3G6 844 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms