RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MATN1P21941 496 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 PCMT1P22061 227 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 ANXA11P50995 505 aaKnown RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 EFNA3P52797 238 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 SLC26A5P58743 744 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 SLC35A2P78381 396 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 MAP4K2Q12851 820 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 GANABQ14697 944 aaKnown RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 SYPL1Q16563 259 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 TMEM151BQ8IW70 566 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 ENTHD1Q8IYW4 607 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 CCDC116Q8IYX3 515 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 ARMC10Q8N2F6 343 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 LRRC25Q8N386 305 aaPredicted RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 GALNT16Q8N428 558 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 OR7G1Q8NGA0 311 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 GPR32P1Q8NGA4 272 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 OR9Q2Q8NGE9 314 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 OR56A1Q8NGH5 318 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 RIT1Q92963 219 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 MOAP1Q96BY2 351 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 VMP1Q96GC9 406 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 ZNF354BQ96LW1 612 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 ZNF681Q96N22 645 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 ALPK1Q96QP1 1244 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 NIPSNAP1Q9BPW8 284 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 SEMA4CQ9C0C4 833 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 CCDC90BQ9GZT6 254 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 NAA50Q9GZZ1 169 aaKnown RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 DUSP21Q9H596 190 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 ZNF556Q9HAH1 456 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 RASSF1Q9NS23 344 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 COPS7AQ9UBW8 275 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 SEC14L3Q9UDX4 400 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 PCDHGB1Q9Y5G3 927 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 TPRP12270 2363 aaKnown RBP9.42□□□□□ -0.9
VPS53-202ENST00000389040 PRAMEF27A3QJZ7 478 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 TRIM64BA6NI03 449 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 ARGFXA6NJG6 315 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 OR6C76A6NM76 312 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 FFAR1O14842 300 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 FAM20BO75063 409 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 WBP4O75554 376 aaKnown RBP9.42□□□□□ -0.9
VPS53-202ENST00000389040 NR2F1P10589 423 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 TNNI3P19429 210 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 PTGER1P34995 402 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 KRT20P35900 424 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 GGT2P36268 569 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 FEN1P39748 380 aaKnown RBP9.42□□□□□ -0.9
VPS53-202ENST00000389040 KCNJ5P48544 419 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 PRKAG1P54619 331 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 PSPHP78330 225 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 PRR5P85299 388 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 DUSP2Q05923 314 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 SMN1Q16637 294 aaKnown RBP9.42□□□□□ -0.9
VPS53-202ENST00000389040 ZNF750Q32MQ0 723 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 FAAH2Q6GMR7 532 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 H3F3CQ6NXT2 135 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 TMEM107Q6UX40 140 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 Q6ZPB1 254 aaPredicted RBP9.42□□□□□ -0.9
VPS53-202ENST00000389040 LANCL3Q6ZV70 420 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 TAGAPQ8N103 731 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 NFAM1Q8NET5 270 aaPredicted RBP9.42□□□□□ -0.9
VPS53-202ENST00000389040 OR1N1Q8NGS0 311 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 ZNF675Q8TD23 568 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 ELP5Q8TE02 316 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 PTPMT1Q8WUK0 201 aaPredicted RBP9.42□□□□□ -0.9
VPS53-202ENST00000389040 APH1BQ8WW43 257 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 XAGE5Q8WWM1 108 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 C8orf44Q96CB5 159 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 COL21A1Q96P44 957 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 LMF1Q96S06 567 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 DCUN1D5Q9BTE7 237 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 RSPO3Q9BXY4 272 aaPredicted RBP9.42□□□□□ -0.9
VPS53-202ENST00000389040 DGCR6LQ9BY27 220 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 PNO1Q9NRX1 252 aaKnown RBP9.42□□□□□ -0.9
VPS53-202ENST00000389040 ERVK-18Q9QC07 812 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 RHCGQ9UBD6 479 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 RNF6Q9Y252 685 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 CFL2Q9Y281 166 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 GPC6Q9Y625 555 aaPredicted RBP9.42□□□□□ -0.9
VPS53-202ENST00000389040 CELSR3Q9NYQ7 3312 aa9.42□□□□□ -0.9
VPS53-202ENST00000389040 A0A1W2PS29 197 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 OR2W5A6NFC9 320 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 C17orf105B2RV13 164 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 MRPS14O60783 128 aaKnown RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 SOX30O94993 753 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 HMGN2P05204 90 aaKnown RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 CBLP22681 906 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 GSSP48637 474 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 GPR143P51810 404 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 CRISP3P54108 245 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 FOXL2P58012 376 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 EMX1Q04741 257 aaPredicted RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 CHAF1BQ13112 559 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 COL9A2Q14055 689 aaPredicted RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 GNA13Q14344 377 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 LASP1Q14847 261 aaKnown RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 NPTX1Q15818 432 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 COL28A1Q2UY09 1125 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms