RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 KCNQ1P51787 676 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 CDK5R2Q13319 367 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 SF3B4Q15427 424 aaKnown RBP eCLIP8.29□□□□□ -1.082e-10■■■■■ 37.5
LIG3-202ENST00000378526 GABRG1Q8N1C3 465 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 GPR26Q8NDV2 337 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 GPX8Q8TED1 209 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 SHC3Q92529 594 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 TSLPQ969D9 159 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 SPTSSAQ969W0 71 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 UBXN10Q96LJ8 280 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 PURBQ96QR8 312 aaKnown RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 ETV7Q9Y603 341 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 SNRNP200O75643 2136 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 MSI1O43347 362 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 CDC123O75794 336 aaPredicted RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 F2RL1P55085 397 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 OR10A3P58181 314 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 RAB40BQ12829 278 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 ECH1Q13011 328 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 VASNQ6EMK4 673 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 KIAA1324Q6UXG2 1013 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 KIAA0319LQ8IZA0 1049 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 GPC2Q8N158 579 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 CASD1Q96PB1 797 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 FAM103A1Q9BTL3 118 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 SDCBP2Q9H190 292 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 KCNH6Q9H252 994 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 SIAEQ9HAT2 523 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 ZNF536O15090 1300 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 PDHXO00330 501 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 H2AFB1P0C5Y9 115 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 IDUAP35475 653 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 THPOP40225 353 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 GCGRP47871 477 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 FBXO48Q5FWF7 155 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 OPN5Q6U736 354 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 SHFQ7M4L6 423 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 TRMT2BQ96GJ1 504 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 BTN2A3PQ96KV6 586 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 DDX31Q9H8H2 851 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 NR2E3Q9Y5X4 410 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 COL15A1P39059 1388 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 WNT9AO14904 365 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 G6PCP35575 357 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 ACSM1Q08AH1 577 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 CLINT1Q14677 625 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 NKX1-1Q15270 411 aaPredicted RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 CPXM2Q8N436 756 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 GPR148Q8TDV2 347 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 PRRC1Q96M27 445 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 MRPL13Q9BYD1 178 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 FZD7O75084 574 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 CLDN11O75508 207 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 NME2P22392 152 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 CXADRP78310 365 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 MRPS6P82932 125 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 ZNF90Q03938 601 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 MPEG1Q2M385 716 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 MAP4K3Q8IVH8 894 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 OR4F15Q8NGB8 312 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 FAM216AQ8WUB2 273 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 GNPNAT1Q96EK6 184 aaPredicted RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 BORCS6Q96GS4 357 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 GINS3Q9BRX5 216 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 SOX7Q9BT81 388 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 HMX1Q9NP08 348 aaPredicted RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 FAM206AQ9NX38 181 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 ZDHHC2Q9UIJ5 367 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 SLC16A7O60669 478 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 VIPP01282 170 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 CAPNS1P04632 268 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 ARNTP27540 789 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 WDR4P57081 412 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 RPL7AP62424 266 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 MLLT11Q13015 90 aaPredicted RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 RBM39Q14498 530 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 OR1J2Q8NGS2 313 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 OR13C4Q8NGS5 318 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 OR6N1Q8NGY5 312 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 NSUN4Q96CB9 384 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 TRMT61BQ9BVS5 477 aaKnown RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 C20orf85Q9H1P6 137 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 SEMA4GQ9NTN9 838 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 FBXW11Q9UKB1 542 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 CEBPZOSA8MTT3 80 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 AMHP03971 560 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 FABP4P15090 132 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 BEX5Q5H9J7 111 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 BPHLQ86WA6 291 aaPredicted RBP8.28□□□□□ -1.08
LIG3-202ENST00000378526 CDH26Q8IXH8 852 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 BRI3BPQ8WY22 251 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 PRAP1Q96NZ9 151 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 CCM2Q9BSQ5 444 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 SYNPO2LQ9H987 977 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 CNTNAP1P78357 1384 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 TNFSF12O43508 249 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 LYPLA2O95372 231 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 FGF19O95750 216 aa8.28□□□□□ -1.08
LIG3-202ENST00000378526 NOXRED1Q6NXP6 359 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms