RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PLK5Q496M5 336 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 TTLL10Q6ZVT0 673 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 METTL27Q8N6F8 245 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF454Q8N9F8 522 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 ARRDC2Q8TBH0 407 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 SAMD11Q96NU1 681 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 TCEAL7Q9BRU2 100 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 SORBS1Q9BX66 1292 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 UBE2J1Q9Y385 318 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 NPIPB15A6NHN6 443 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 NPC1O15118 1278 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 GMDSO60547 372 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 FZD7O75084 574 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 PLGP00747 810 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 TAF1P21675 1872 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 GABRA5P31644 462 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 CLRN1P58418 232 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 RACK1P63244 317 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 SGCAQ16586 387 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 HYAL4Q2M3T9 481 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 LCN10Q6JVE6 187 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 GPR26Q8NDV2 337 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 CTRCQ99895 268 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 WDR77Q9BQA1 342 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 LSM5Q9Y4Y9 91 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 IER3IP1Q9Y5U9 82 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 PHYHO14832 338 aa18.39■□□□□ 0.54
CCDC88B-202ENST00000356786 DDOSTP39656 456 aa18.39■□□□□ 0.54
CCDC88B-202ENST00000356786 RPS25P62851 125 aaKnown RBP18.39■□□□□ 0.54
CCDC88B-202ENST00000356786 ASB6Q9NWX5 421 aa18.39■□□□□ 0.54
CCDC88B-202ENST00000356786 PSMB1P20618 241 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 IL13RA1P78552 427 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 PIP5KL1Q5T9C9 394 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 TTC9BQ8N6N2 239 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 SDR9C7Q8NEX9 313 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 TMEM174Q8WUU8 243 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 MYLIPQ8WY64 445 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 IL21RQ9HBE5 538 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 MC3RP41968 323 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 ZNF41P51814 821 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 SORDQ00796 357 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 B3GLCTQ6Y288 498 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 CBARPQ8N350 705 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 CREB3L4Q8TEY5 395 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 ZBTB8AQ96BR9 441 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 AP1S3Q96PC3 154 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 OR52D1Q9H346 318 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 FZD3Q9NPG1 666 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 ACRP10323 421 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 RBMS1P29558 406 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 ISL1P61371 349 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 OR4C15Q8NGM1 316 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 HRH4Q9H3N8 390 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 STRCP1A6NGW2 1772 aa18.39■□□□□ 0.53
CCDC88B-202ENST00000356786 OR2A25A4D2G3 310 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 SOD2P04179 222 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 SNRNP70P08621 437 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 GJA5P36382 358 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 TCTE1Q5JU00 501 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 LRRC56Q8IYG6 542 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 PGAM5Q96HS1 289 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 METTL2AQ96IZ6 378 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 SPHK2Q9NRA0 654 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 AKAP11Q9UKA4 1901 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 TRBV4-1A0A0J9YWV2 114 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 NFYAP23511 347 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 PTGER1P34995 402 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 DBPQ10586 325 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 PGGHGQ32M88 737 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 TSSK4Q6SA08 328 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 TPRA1Q86W33 373 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 OR5T1Q8NG75 326 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 PNPLA2Q96AD5 504 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 ZNF416Q9BWM5 594 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 FBXL2Q9UKC9 423 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 ADAMTS5Q9UNA0 930 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 CORINQ9Y5Q5 1042 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 NWD2Q9ULI1 1742 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 OR6C65A6NJZ3 312 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 RFXAPO00287 272 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 TOR1AO14656 332 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 SLC34A2O95436 690 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 GAAP10253 952 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 RAB6AP20340 208 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 GDI1P31150 447 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 TGM4P49221 684 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 MECP2P51608 486 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 CAV2P51636 162 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 CSNK2A1P68400 391 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 TAGLNQ01995 201 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 MPP7Q5T2T1 576 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 CSNK2A3Q8NEV1 391 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 SULT4A1Q9BR01 284 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 CLEC2LP0C7M8 214 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 RAB28P51157 221 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 C18orf63Q68DL7 685 aa18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 GRASPQ7Z6J2 395 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 KCTD12Q96CX2 325 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 ZNF587Q96SQ5 575 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-202ENST00000356786 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms