RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 ROPN1LQ96C74 230 aa12.71□□□□□ -0.37
LIMS1-201ENST00000332345 WDYHV1Q96HA8 205 aa12.71□□□□□ -0.37
LIMS1-201ENST00000332345 PIGQQ9BRB3 760 aa12.71□□□□□ -0.37
LIMS1-201ENST00000332345 TTYH2Q9BSA4 534 aa12.71□□□□□ -0.37
LIMS1-201ENST00000332345 TPT1P8Q9HAU6 139 aa12.71□□□□□ -0.37
LIMS1-201ENST00000332345 THUMPD1Q9NXG2 353 aaKnown RBP12.71□□□□□ -0.37
LIMS1-201ENST00000332345 MKLN1Q9UL63 735 aa12.71□□□□□ -0.37
LIMS1-201ENST00000332345 WDR45Q9Y484 360 aa12.71□□□□□ -0.37
LIMS1-201ENST00000332345 PTPN13Q12923 2485 aa12.71□□□□□ -0.37
LIMS1-201ENST00000332345 FLNBO75369 2602 aaKnown RBP12.71□□□□□ -0.38
LIMS1-201ENST00000332345 ARHGAP21Q5T5U3 1957 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 A0A096LPI6 279 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 B4DXG7 233 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 NPIPB9F8W1W9 429 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 NR5A2O00482 541 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 HCRTR2O43614 444 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 GMFGO60234 142 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 EPPINO95925 133 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 GLI4P10075 376 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 PEPDP12955 493 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 CRATP43155 626 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 ZNF41P51814 821 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-201ENST00000332345 ARFIP2P53365 341 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 ZNF141Q15928 474 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 RAET1LQ5VY80 246 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 SLC2A7Q6PXP3 512 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 ZNF614Q8N883 585 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 PNPT1Q8TCS8 783 aaKnown RBP12.7□□□□□ -0.38
LIMS1-201ENST00000332345 ZPLD1Q8TCW7 415 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 ASB5Q8WWX0 329 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 PMM1Q92871 262 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 SH3YL1Q96HL8 342 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-201ENST00000332345 TRNT1Q96Q11 434 aaKnown RBP12.7□□□□□ -0.38
LIMS1-201ENST00000332345 TMEM120AQ9BXJ8 343 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 ZNF350Q9GZX5 532 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 SAP130Q9H0E3 1048 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 RAD21L1Q9H4I0 556 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 MTHFD2LQ9H903 347 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-201ENST00000332345 SLC6A13Q9NSD5 602 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 PCDHB14Q9Y5E9 798 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 FAM215AQ9Y5M1 114 aa12.7□□□□□ -0.38
LIMS1-201ENST00000332345 NPIPA5A0A0B4J1W7 369 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 A0A1W2PP18 115 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 TMEM247A6NEH6 219 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 NPIPA7E9PJI5 369 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 CLIC1O00299 241 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 EIF4E2O60573 245 aaKnown RBP12.69□□□□□ -0.38
LIMS1-201ENST00000332345 CLDN14O95500 239 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 CLDN1O95832 211 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 NPIPA8P0DM63 369 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 NR2F1P10589 423 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 TCEA1P23193 301 aaKnown RBP12.69□□□□□ -0.38
LIMS1-201ENST00000332345 CHRNB4P30926 498 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 ADH7P40394 386 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 STARP49675 285 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 LHX2P50458 406 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 P2RX1P51575 399 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 NUP107P57740 925 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 EEFSECP57772 596 aaKnown RBP12.69□□□□□ -0.38
LIMS1-201ENST00000332345 B3GALT5-AS1P59052 145 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 SRYQ05066 204 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 CD226Q15762 336 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 COX20Q5RI15 118 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.69□□□□□ -0.38
LIMS1-201ENST00000332345 PDZK1Q5T2W1 519 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 RTL6Q6ICC9 239 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 DNAJC14Q6Y2X3 702 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-201ENST00000332345 NCCRP1Q6ZVX7 275 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-201ENST00000332345 EIF3MQ7L2H7 374 aaKnown RBP12.69□□□□□ -0.38
LIMS1-201ENST00000332345 CHMP1BQ7LBR1 199 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 ZNF619Q8N2I2 560 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 MARVELD2Q8N4S9 558 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 CA5BP1Q8WTZ4 195 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 TSPEARQ8WU66 669 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 ZBTB8AQ96BR9 441 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 SDCCAG3Q96C92 435 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 PAIP1Q9H074 479 aaKnown RBP12.69□□□□□ -0.38
LIMS1-201ENST00000332345 CALHM2Q9HA72 323 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 SLC52A3Q9NQ40 469 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 CARD8Q9Y2G2 431 aa12.69□□□□□ -0.38
LIMS1-201ENST00000332345 KLF2Q9Y5W3 355 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-201ENST00000332345 ASH1LQ9NR48 2969 aaKnown RBP12.69□□□□□ -0.38
LIMS1-201ENST00000332345 SERINC4A6NH21 518 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 CD8B2A6NJW9 211 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 H0Y3Z8 333 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 DYNC1I1O14576 645 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 ZNF264O43296 627 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 KIAA0513O60268 411 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 UGT2B17O75795 530 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 H6PDO95479 791 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 NUDT14O95848 222 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 C1QCP02747 245 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 PPIBP23284 216 aaKnown RBP12.68□□□□□ -0.38
LIMS1-201ENST00000332345 TIMP3P35625 211 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 EIF1P41567 113 aaKnown RBP12.68□□□□□ -0.38
LIMS1-201ENST00000332345 SUMO3P55854 103 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-201ENST00000332345 CHRNEQ04844 493 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 GNA13Q14344 377 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 SYPL1Q16563 259 aa12.68□□□□□ -0.38
LIMS1-201ENST00000332345 ACSF3Q4G176 576 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms