RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 OR51Q1Q8NH59 317 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 GAB3Q8WWW8 586 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 FN3KRPQ9HA64 309 aa13.52□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF223Q9UK11 482 aaPredicted RBP13.52□□□□□ -0.24
COL7A1-201ENST00000328333 TMEM212A6NML5 194 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 SLC43A1O75387 559 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 RIN1Q13671 783 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 BRICD5Q6PL45 260 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 OR52N2Q8NGI0 321 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 SGK3Q96BR1 496 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 PTCHD1Q96NR3 888 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 POMT1Q9Y6A1 747 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 DOCK10Q96BY6 2186 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 ADH5P11766 374 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 CRHBPP24387 322 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 DIO3P55073 304 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 COX15Q7KZN9 410 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 SLC35F2Q8IXU6 374 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 ANKRD53Q8N9V6 530 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 OR4K1Q8NGD4 311 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 NPLOC4Q8TAT6 608 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 SLC6A17Q9H1V8 727 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 CST3P01034 146 aaPredicted RBP13.52□□□□□ -0.25
COL7A1-201ENST00000328333 OR13C4Q8NGS5 318 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 TMEM82A0PJX8 343 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 NDUFB2O95178 105 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 HLA-DOBP13765 273 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 SNCAP37840 140 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 C1orf94Q6P1W5 598 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 SCML1Q9UN30 329 aa13.52□□□□□ -0.25
COL7A1-201ENST00000328333 RNF212Q495C1 297 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 MS4A13Q5J8X5 152 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 GIMAP1Q8WWP7 306 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 CASD1Q96PB1 797 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 ZCCHC4Q9H5U6 513 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 DZANK1Q9NVP4 752 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 FABP6P51161 128 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 TPMTP51580 245 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 SGSHP51688 502 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 A0A087WZY1 265 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 GIPRP48546 466 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 CXCL9Q07325 125 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 FAM182AQ5T1J6 154 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF611Q8N823 705 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF689Q96CS4 500 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-201ENST00000328333 NMNAT2Q9BZQ4 307 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 MMP28Q9H239 520 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 SLC14A2Q15849 920 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 ABHD12BQ7Z5M8 362 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-201ENST00000328333 THSD1Q9NS62 852 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 SLC17A6Q9P2U8 582 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 HS3ST4Q9Y661 456 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 FER1L5A0AVI2 2057 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 DUSP11O75319 330 aaKnown RBP13.51□□□□□ -0.25
COL7A1-201ENST00000328333 IMP4Q96G21 291 aaKnown RBP13.51□□□□□ -0.25
COL7A1-201ENST00000328333 RNF208Q9H0X6 261 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 GAREM1Q9H706 876 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 KLK4Q9Y5K2 254 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 PIK3C2AO00443 1686 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 TCRBV7S3A2A0A539 114 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 FGF4P08620 206 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 S100A11P31949 105 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 EEF1A1P68104 462 aaKnown RBP13.51□□□□□ -0.25
COL7A1-201ENST00000328333 EEF1A1P5Q5VTE0 462 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 NDUFAF7Q7L592 441 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 BAGE3Q86Y29 109 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 BAGE2Q86Y30 109 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 OR4K5Q8NGD3 323 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 RSPRY1Q96DX4 576 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 RANGRFQ9HD47 186 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-201ENST00000328333 SLAMF7Q9NQ25 335 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 MYBPHLA2RUH7 354 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 MSTNO14793 375 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 RPS17P08708 135 aaKnown RBP13.51□□□□□ -0.25
COL7A1-201ENST00000328333 ADORA3P0DMS8 318 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 LAPTM4AQ15012 233 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 RHCGQ9UBD6 479 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 TESQ9UGI8 421 aaKnown RBP13.51□□□□□ -0.25
COL7A1-201ENST00000328333 PCDHA9Q9Y5H5 950 aa13.51□□□□□ -0.25
COL7A1-201ENST00000328333 A0A087WUU8 490 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 LOC102725191A0A1B0GVB3 256 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 CALCRP30988 508 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 RPL13AP40429 203 aaKnown RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 PER3P56645 1201 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 TAS2R38P59533 333 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 ASPGQ86U10 573 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 ZFP90Q8TF47 636 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 UBL7Q96S82 380 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 ALKBH4Q9NXW9 302 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 COL14A1Q05707 1796 aaKnown RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 KNG1P01042 644 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 ADRB1P08588 477 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 ACP5P13686 325 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 RAB6AP20340 208 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 RBM39Q14498 530 aaKnown RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 CATSPEREQ5SY80 951 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 FAM205BPQ63HN1 556 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 ZBTB8AQ96BR9 441 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SEMA4GQ9NTN9 838 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 FKTNO75072 461 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms