RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 MAP2K6P52564 334 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 VSX2P58304 361 aaPredicted RBP12.53□□□□□ -0.4
SKA3-202ENST00000314759 STXBP1P61764 594 aaKnown RBP12.53□□□□□ -0.4
SKA3-202ENST00000314759 CRYZQ08257 329 aaKnown RBP12.53□□□□□ -0.4
SKA3-202ENST00000314759 SUZ12Q15022 739 aaKnown RBP12.53□□□□□ -0.4
SKA3-202ENST00000314759 C9orf64Q5T6V5 341 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 PRAMEF8Q5VWM4 474 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 PRAMEF7Q5VXH5 474 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 SFXN4Q6P4A7 337 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 GDF7Q7Z4P5 450 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 BMP8AQ7Z5Y6 402 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 TMEM99Q8N816 258 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 OR8K5Q8NH50 307 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 CD99L2Q8TCZ2 262 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 SFXN5Q8TD22 340 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 NR4A3Q92570 626 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 RIT1Q92963 219 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 PCBD2Q9H0N5 130 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 BEX1Q9HBH7 125 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 TEX13CA0A0J9YWL9 993 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 E9PI62 339 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 CLEC3AO75596 197 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 LAG3P18627 525 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 NDUFV2P19404 249 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 GCGRP47871 477 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 SRP54P61011 504 aaKnown RBP12.53□□□□□ -0.4
SKA3-202ENST00000314759 MESP2Q0VG99 397 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 SLC9A5Q14940 896 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 FAM122CQ6P4D5 195 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 MBOAT2Q6ZWT7 520 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 GPAT4Q86UL3 456 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 POF1BQ8WVV4 589 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 KCTD12Q96CX2 325 aaKnown RBP12.53□□□□□ -0.4
SKA3-202ENST00000314759 VWCEQ96DN2 955 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 UBQLN3Q9H347 655 aa12.53□□□□□ -0.4
SKA3-202ENST00000314759 SOX30O94993 753 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 TCRBP04435 133 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 ZGLP1P0C6A0 271 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 RGS8P57771 180 aaPredicted RBP12.52□□□□□ -0.4
SKA3-202ENST00000314759 RPL6Q02878 288 aaKnown RBP12.52□□□□□ -0.4
SKA3-202ENST00000314759 PUDPQ08623 228 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 BTN1A1Q13410 526 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 ZNF77Q15935 545 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 KLHL12Q53G59 568 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 C18orf63Q68DL7 685 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 CHMP1BQ7LBR1 199 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 OR56A1Q8NGH5 318 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 OR5W2Q8NH69 310 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 SLC41A3Q96GZ6 507 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 AHCYL2Q96HN2 611 aaKnown RBP12.52□□□□□ -0.4
SKA3-202ENST00000314759 MCHR1Q99705 422 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 PITHD1Q9GZP4 211 aaPredicted RBP12.52□□□□□ -0.4
SKA3-202ENST00000314759 ERVMER34-1Q9H9K5 563 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 UBQLN2Q9UHD9 624 aa12.52□□□□□ -0.4
SKA3-202ENST00000314759 PRNPP04156 253 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 HMGN1P05114 100 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 HOXB3P14651 431 aaPredicted RBP12.52□□□□□ -0.41
SKA3-202ENST00000314759 PAICSP22234 425 aaKnown RBP12.52□□□□□ -0.41
SKA3-202ENST00000314759 HSD17B2P37059 387 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 MC3RP41968 323 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 CCR6P51684 374 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 DEFB103AP81534 67 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 ST3GAL2Q16842 350 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 METRNLQ641Q3 311 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 TMEM81Q6P7N7 255 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 ARL9Q6T311 187 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 LYPD4Q6UWN0 246 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 MS4A15Q8N5U1 240 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 KLHL15Q96M94 604 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 HCAR1Q9BXC0 346 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 RBCK1Q9BYM8 510 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 ZBP1Q9H171 429 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 DPAGT1Q9H3H5 408 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 PRKAG2Q9UGJ0 569 aa12.52□□□□□ -0.41
SKA3-202ENST00000314759 A0A0G2JK05 382 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 H3BUI4 141 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 SLC9A3R1O14745 358 aaPredicted RBP12.51□□□□□ -0.41
SKA3-202ENST00000314759 FZD7O75084 574 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 IFNA7P01567 189 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 CISD3P0C7P0 127 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 ADRB3P13945 408 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 GLULP15104 373 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 GIFP27352 417 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 SHC2P98077 582 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 E2F1Q01094 437 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 ZMYND11Q15326 602 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 SLC25A35Q3KQZ1 300 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 NIPAL3Q6P499 406 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 RTL4Q6ZR62 310 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 LUZP2Q86TE4 346 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 ZNF687Q8N1G0 1237 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 NUP43Q8NFH3 380 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 TRMT10AQ8TBZ6 339 aaKnown RBP12.51□□□□□ -0.41
SKA3-202ENST00000314759 PXYLP1Q8TE99 480 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 RBPMSQ93062 196 aaKnown RBP12.51□□□□□ -0.41
SKA3-202ENST00000314759 ENKD1Q9H0I2 346 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 CLEC4MQ9H2X3 399 aaPredicted RBP12.51□□□□□ -0.41
SKA3-202ENST00000314759 RDH8Q9NYR8 311 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 NLGN3Q9NZ94 848 aa12.51□□□□□ -0.41
SKA3-202ENST00000314759 SLC9B1P1A6NJY1 282 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms