RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 RBBP4Q09028 425 aa10.22□□□□□ -0.77
LSM3-201ENST00000306024 SP140Q13342 867 aa10.22□□□□□ -0.77
LSM3-201ENST00000306024 SFRP4Q6FHJ7 346 aaPredicted RBP10.22□□□□□ -0.77
LSM3-201ENST00000306024 TRIM40Q6P9F5 258 aa10.22□□□□□ -0.77
LSM3-201ENST00000306024 DCUN1D3Q8IWE4 304 aa10.22□□□□□ -0.77
LSM3-201ENST00000306024 IQCF1Q8N6M8 205 aa10.22□□□□□ -0.77
LSM3-201ENST00000306024 OR5T2Q8NGG2 359 aa10.22□□□□□ -0.77
LSM3-201ENST00000306024 IL17FQ96PD4 163 aa10.22□□□□□ -0.77
LSM3-201ENST00000306024 SORCS2Q96PQ0 1159 aa10.22□□□□□ -0.77
LSM3-201ENST00000306024 TM7SF3Q9NS93 570 aa10.22□□□□□ -0.77
LSM3-201ENST00000306024 MRPL15Q9P015 296 aaKnown RBP10.22□□□□□ -0.77
LSM3-201ENST00000306024 ABCA7Q8IZY2 2146 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 NME6O75414 186 aaPredicted RBP10.21□□□□□ -0.77
LSM3-201ENST00000306024 SPDEFO95238 335 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 CFDP00746 253 aaPredicted RBP10.21□□□□□ -0.77
LSM3-201ENST00000306024 TCRBP04435 133 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 CFIP05156 583 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 GNSP15586 552 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 AK4P27144 223 aaPredicted RBP10.21□□□□□ -0.77
LSM3-201ENST00000306024 WNT4P56705 351 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 SF1Q15637 639 aaKnown RBP10.21□□□□□ -0.77
LSM3-201ENST00000306024 MTFR2Q6P444 385 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 OR9A1PQ8NGU1 263 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 LRR1Q96L50 414 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 TEFMQ96QE5 360 aaKnown RBP10.21□□□□□ -0.77
LSM3-201ENST00000306024 LDAHQ9H6V9 325 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 NMNAT1Q9HAN9 279 aaPredicted RBP10.21□□□□□ -0.77
LSM3-201ENST00000306024 ASB4Q9Y574 426 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 CDH10Q9Y6N8 788 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 CACNA1IQ9P0X4 2223 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 B4DGG1 531 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 OR7A17O14581 309 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 PAPLNO95428 1278 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 PDYNP01213 254 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 CXCL3P19876 107 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 PAICSP22234 425 aaKnown RBP10.21□□□□□ -0.77
LSM3-201ENST00000306024 SLC14A1Q13336 389 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 SMCO1Q147U7 214 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 NFATC4Q14934 902 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 LGALSLQ3ZCW2 172 aaPredicted RBP10.21□□□□□ -0.77
LSM3-201ENST00000306024 FGD2Q7Z6J4 655 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 IZUMO1Q8IYV9 350 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 OR2L2Q8NH16 312 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 TMEM163Q8TC26 289 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 NECAB3Q96P71 396 aaPredicted RBP10.21□□□□□ -0.77
LSM3-201ENST00000306024 PIP5K1AQ99755 562 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 SLC12A9Q9BXP2 914 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 GPN1Q9HCN4 374 aaPredicted RBP10.21□□□□□ -0.77
LSM3-201ENST00000306024 NDUFB11Q9NX14 153 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 KLHL42Q9P2K6 505 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 LIPT1Q9Y234 373 aa10.21□□□□□ -0.77
LSM3-201ENST00000306024 KHNYNO15037 678 aaKnown RBP10.21□□□□□ -0.78
LSM3-201ENST00000306024 AKAP8O43823 692 aaKnown RBP10.21□□□□□ -0.78
LSM3-201ENST00000306024 ZNF254O75437 659 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 STX11O75558 287 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 RLN1P04808 185 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 SRP9P49458 86 aaKnown RBP10.21□□□□□ -0.78
LSM3-201ENST00000306024 RIPPLY1Q0D2K3 151 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 TMEM17Q86X19 198 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 STX12Q86Y82 276 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 ZNF527Q8NB42 609 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 SLC38A2Q96QD8 506 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 RBP7Q96R05 134 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 MTERF1Q99551 399 aaKnown RBP10.21□□□□□ -0.78
LSM3-201ENST00000306024 NPAS1Q99742 590 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 XKR8Q9H6D3 395 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 FGF22Q9HCT0 170 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 NDUFAF4Q9P032 175 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 KIF25Q9UIL4 384 aa10.21□□□□□ -0.78
LSM3-201ENST00000306024 TCF20Q9UGU0 1960 aaKnown RBP10.2□□□□□ -0.78
LSM3-201ENST00000306024 PRSS38A1L453 326 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 OR52A4PA6NMU1 304 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 FAM227AF5H4B4 570 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 YKT6O15498 198 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 CHST10O43529 356 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 PTP4A3O75365 173 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 SLC16A8O95907 504 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 EBLN1P0CF75 366 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 GABRB1P18505 474 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 EVX1P49640 407 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 ARL4DP49703 201 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 CCR6P51684 374 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 SELENOWP63302 87 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 FGL1Q08830 312 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 ANXA8L1Q5VT79 327 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 CORO6Q6QEF8 472 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 TSSK4Q6SA08 328 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 LYPD4Q6UWN0 246 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 C11orf96Q7Z7L8 435 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 CALHM3Q86XJ0 350 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 FRMD1Q8N878 549 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 OR11H4Q8NGC9 324 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 LMX1AQ8TE12 382 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 C2CD4CQ8TF44 421 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 CXorf58Q96LI9 332 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 TREX2Q9BQ50 279 aaPredicted RBP10.2□□□□□ -0.78
LSM3-201ENST00000306024 NIT2Q9NQR4 276 aa10.2□□□□□ -0.78
LSM3-201ENST00000306024 TEX10Q9NXF1 929 aaPredicted RBP10.2□□□□□ -0.78
LSM3-201ENST00000306024 APOBEC3BQ9UH17 382 aaKnown RBP10.2□□□□□ -0.78
LSM3-201ENST00000306024 GTPBP1O00178 669 aaKnown RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms