RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PEX11BO96011 259 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 HEXBP07686 556 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 NT5EP21589 574 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 MASP1P48740 699 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 CRISP3P54108 245 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 VSX2P58304 361 aaPredicted RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 MAP2K5Q13163 448 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 GPR176Q14439 515 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SLC22A25Q6T423 547 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 DLK2Q6UY11 383 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 MBOAT1Q6ZNC8 495 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 ENTHD1Q8IYW4 607 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 OR10R2Q8NGX6 335 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 TM9SF4Q92544 642 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 EXOSC8Q96B26 276 aaKnown RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 C14orf79Q96F83 325 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 FEVQ99581 238 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 ARPC5LQ9BPX5 153 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SORBS1Q9BX66 1292 aaKnown RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 UBTD1Q9HAC8 227 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 TAS2R8Q9NYW2 309 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 POU2F3Q9UKI9 436 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 DNMT3AQ9Y6K1 912 aaPredicted RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 ZAR1LA6NP61 321 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 RGS11O94810 467 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 IGLV3-27P01718 113 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 PGCP20142 388 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 AGXTP21549 392 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 GKP32189 559 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 LIPAP38571 399 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 AVPR1BP47901 424 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SLC11A1P49279 550 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 KHKP50053 298 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 TPMTP51580 245 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 MLF1P58340 268 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 HSPB3Q12988 150 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 ADGRF1Q5T601 910 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SLC8B1Q6J4K2 584 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 GPR142Q7Z601 462 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 DAZAP1Q96EP5 407 aaKnown RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 ZBED6CLQ96FA7 236 aaPredicted RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 POM121Q96HA1 1249 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 ELF4Q99607 663 aaPredicted RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 EBPLQ9BY08 206 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 RLIMQ9NVW2 624 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 KCMF1Q9P0J7 381 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SLC22A14Q9Y267 594 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 GPSM3Q9Y4H4 160 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 URGCP-MRPS24S4R325 110 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 AQP7O14520 342 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 PCDH17O14917 1159 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 GPRIN2O60269 458 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 LALBAP00709 142 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 MAP2K4P45985 399 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CLCN7P51798 805 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CLDN20P56880 219 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 RAP2BP61225 183 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 PIGFQ07326 219 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 RGNQ15493 299 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 ZNF791Q3KP31 576 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 RAB6CQ53S08 254 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 TPRG1Q6ZUI0 275 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CD163Q86VB7 1156 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SLC43A3Q8NBI5 491 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 OR2D3Q8NGH3 330 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 OR10G6Q8NH81 332 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 PDXPQ96GD0 296 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 JAM3Q9BX67 310 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 RAB6CQ9H0N0 254 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 ACSS1Q9NUB1 689 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 USP22Q9UPT9 525 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 A0A1W2PQ09 198 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 A8MU76 341 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 H3BUI4 141 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 HAX1O00165 279 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 NIPSNAP2O75323 286 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 RNF144AP50876 292 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 CAV2P51636 162 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 MINDY4Q4G0A6 757 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 FBXO48Q5FWF7 155 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 HBMQ6B0K9 141 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 MFSD9Q8NBP5 474 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 TRMT10AQ8TBZ6 339 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 CNOT9Q92600 299 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 UBL7Q96S82 380 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 NDC1Q9BTX1 674 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 TPPP3Q9BW30 176 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CARS2Q9HA77 564 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 POLMQ9NP87 494 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 PCDHGA9Q9Y5G4 932 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 K7ERQ8 282 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 GPR37L1O60883 481 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 KLF8O95600 359 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 SEMG1P04279 462 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CKMP06732 381 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SDC1P18827 310 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 POU3F3P20264 500 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 POLR2IP36954 125 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 BRCC3P46736 316 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 PTH2RP49190 550 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms