RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CA5BQ9Y2D0 317 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 GPR55Q9Y2T6 319 aaPredicted RBP12.59□□□□□ -0.39
SKA3-201ENST00000298260 AK6Q9Y3D8 172 aaKnown RBP12.59□□□□□ -0.39
SKA3-201ENST00000298260 PCDHGA5Q9Y5G8 931 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 KLF2Q9Y5W3 355 aaPredicted RBP12.59□□□□□ -0.39
SKA3-201ENST00000298260 RNF215Q9Y6U7 377 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 CASP8AP2Q9UKL3 1982 aa12.58□□□□□ -0.39
SKA3-201ENST00000298260 D6RAR5 112 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 PGRMC2O15173 223 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 RP2O75695 350 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 RPL17P18621 184 aaKnown RBP12.58□□□□□ -0.4
SKA3-201ENST00000298260 ACHEP22303 614 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 KCNJ3P48549 501 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 CTSCP53634 463 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 CLDN12P56749 244 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 SREBF2Q12772 1141 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 AADACL4Q5VUY2 407 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 C1orf94Q6P1W5 598 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 MED27Q6P2C8 311 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 SEZ6L2Q6UXD5 910 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 ZNF784Q8NCA9 323 aaPredicted RBP12.58□□□□□ -0.4
SKA3-201ENST00000298260 STK35Q8TDR2 534 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 SCARB1Q8WTV0 552 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 AUTS2Q8WXX7 1259 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 DERL3Q96Q80 235 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 CMSS1Q9BQ75 279 aaKnown RBP12.58□□□□□ -0.4
SKA3-201ENST00000298260 ALG8Q9BVK2 526 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 ISYNA1Q9NPH2 558 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 SLC22A11Q9NSA0 550 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 MRPS18AQ9NVS2 196 aaKnown RBP12.58□□□□□ -0.4
SKA3-201ENST00000298260 COA4Q9NYJ1 87 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 A0A1W2PRQ8 180 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 KDM4EB2RXH2 506 aaPredicted RBP12.58□□□□□ -0.4
SKA3-201ENST00000298260 PRSS44E7EML9 344 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 FMO6PO60774 539 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 PRKRAO75569 313 aaKnown RBP12.58□□□□□ -0.4
SKA3-201ENST00000298260 STATHP02808 62 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 NR2F1P10589 423 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 ATP1B2P14415 290 aaPredicted RBP12.58□□□□□ -0.4
SKA3-201ENST00000298260 GABRA1P14867 456 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 RAB3BP20337 219 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 HCCSP53701 268 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 H2BFSP57053 126 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 LTB4RQ15722 352 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 SLC25A30Q5SVS4 291 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 SLCO4C1Q6ZQN7 724 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 TMPRSS9Q7Z410 1059 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 PDZD9Q8IXQ8 264 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 BPIFCQ8NFQ6 507 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 OR52I2Q8NH67 350 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 SPATA5L1Q9BVQ7 753 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 HRASLSQ9HDD0 168 aa12.58□□□□□ -0.4
SKA3-201ENST00000298260 SERTM1A2A2V5 107 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 LRRN3E7EW58 273 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 OAZ2O95190 189 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 UGT2B7P16662 529 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 UQCRC2P22695 453 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 CTSOP43234 321 aaPredicted RBP12.57□□□□□ -0.4
SKA3-201ENST00000298260 STPG1Q5TH74 334 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 DCAF12L2Q5VW00 463 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 ZNF660Q6AZW8 331 aaPredicted RBP12.57□□□□□ -0.4
SKA3-201ENST00000298260 NKAIN4Q8IVV8 208 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 RFLNBQ8N5W9 214 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 OR5W2Q8NH69 310 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 NANPQ8TBE9 248 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 NKX6-2Q9C056 277 aaPredicted RBP12.57□□□□□ -0.4
SKA3-201ENST00000298260 ENKD1Q9H0I2 346 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 LRRN3Q9H3W5 708 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 BRF2Q9HAW0 419 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 NPDC1Q9NQX5 325 aaPredicted RBP12.57□□□□□ -0.4
SKA3-201ENST00000298260 ASB6Q9NWX5 421 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 GLS2Q9UI32 602 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 ACAD8Q9UKU7 415 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 OR10H1Q9Y4A9 318 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 PLXNA3P51805 1871 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 GLOD5A6NK44 160 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 H0YC42 278 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 H7C2Y5 167 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 J3QLW9 94 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 SIGLEC6O43699 453 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 GALR3O60755 368 aaPredicted RBP12.57□□□□□ -0.4
SKA3-201ENST00000298260 NDUFS6O75380 124 aaKnown RBP12.57□□□□□ -0.4
SKA3-201ENST00000298260 ZNF19P17023 458 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 PSMB1P20618 241 aaKnown RBP12.57□□□□□ -0.4
SKA3-201ENST00000298260 CCR9P51686 369 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 SEC61A1P61619 476 aaKnown RBP12.57□□□□□ -0.4
SKA3-201ENST00000298260 PRR5P85299 388 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 PDE7AQ13946 482 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 LINC00303Q3SY05 128 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 OR7E24Q6IFN5 339 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 HEPHL1Q6MZM0 1159 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 SLC16A13Q7RTY0 426 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 MRPL10Q7Z7H8 261 aaKnown RBP12.57□□□□□ -0.4
SKA3-201ENST00000298260 BTBD1Q9H0C5 482 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 MTG2Q9H4K7 406 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 FKRPQ9H9S5 495 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 NOX3Q9HBY0 568 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 BABAM2Q9NXR7 383 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 A0A0U1RQF3 1178 aa12.57□□□□□ -0.4
SKA3-201ENST00000298260 SURF4O15260 269 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms