RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	HP	P00738	406 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	NGFR	P08138	427 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	CYP4B1	P13584	511 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	ENDOU	P21128	410 aa	Known RBP	10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	F8A1	P23610	371 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	ABCD3	P28288	659 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	ADH7	P40394	386 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	YAP1	P46937	504 aa	Known RBP	10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	IST1	P53990	364 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	RGS8	P57771	180 aa	Predicted RBP	10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	SPIB	Q01892	262 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	PLCXD2	Q0VAA5	305 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	FGFBP1	Q14512	234 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	MRPL2	Q5T653	305 aa	Known RBP	10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	DEF8	Q6ZN54	512 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	TMEM179B	Q7Z7N9	219 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	RAB43	Q86YS6	212 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	EPHX4	Q8IUS5	362 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	CBR4	Q8N4T8	237 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	IL22RA1	Q8N6P7	574 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	OR4C3	Q8NH37	302 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	DNAJC9	Q8WXX5	260 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	OMA1	Q96E52	524 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	IP6K3	Q96PC2	410 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	LMF1	Q96S06	567 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	ADO	Q96SZ5	270 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	ZNF184	Q99676	751 aa	Predicted RBP	10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	WFDC6	Q9BQY6	131 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	POLR2J2	Q9GZM3	115 aa	Known RBP	10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	POLR2J3	Q9H1A7	115 aa	Known RBP	10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	ACER3	Q9NUN7	267 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	RLIM	Q9NVW2	624 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	VNN3	Q9NY84	501 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	MYOT	Q9UBF9	498 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	ACAD8	Q9UKU7	415 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	SAMHD1	Q9Y3Z3	626 aa	Known RBP	10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	TESMIN	Q9Y4I5	508 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	NPFFR2	Q9Y5X5	522 aa		10.84	□□□□□ -0.67
CLN6-223	ENST00000637823	EML6	Q6ZMW3	1958 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	SERINC4	A6NH21	518 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	OR6C70	A6NIJ9	312 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	CLDN24	A6NM45	220 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823		J3KTA2	159 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	SCD	O00767	359 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	AP3D1	O14617	1153 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	FFAR1	O14842	300 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	ABCB7	O75027	752 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	PPM1B	O75688	479 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	GADD45G	O95257	159 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	NADK	O95544	446 aa	Predicted RBP	10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	HPGD	P15428	266 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	IFNA8	P32881	189 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	HSPA13	P48723	471 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	CDH12	P55289	794 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	PPP1R8	Q12972	351 aa	Known RBP	10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	CAMK2B	Q13554	666 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	EFR3A	Q14156	821 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	RTP5	Q14D33	572 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	NPTX1	Q15818	432 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	COLEC12	Q5KU26	742 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	TBPL2	Q6SJ96	375 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	RANBP3L	Q86VV4	465 aa	Predicted RBP	10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	KBTBD2	Q8IY47	623 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	ZNF440	Q8IYI8	595 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	PRR22	Q8IZ63	422 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	AMER2	Q8N7J2	671 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	ZNF614	Q8N883	585 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	SLC22A8	Q8TCC7	542 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	THAP3	Q8WTV1	239 aa	Predicted RBP	10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	KIAA1143	Q96AT1	154 aa	Predicted RBP	10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	DHRS1	Q96LJ7	313 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	ZNF597	Q96LX8	424 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	MCHR1	Q99705	422 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	RBM4B	Q9BQ04	359 aa	Known RBP	10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	ZNF559	Q9BR84	538 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	FNDC11	Q9BVV2	318 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	RBM4	Q9BWF3	364 aa	Known RBP	10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	LIN28A	Q9H9Z2	209 aa	Known RBP	10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	NMNAT1	Q9HAN9	279 aa	Predicted RBP	10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	ZNF160	Q9HCG1	818 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	P4HTM	Q9NXG6	502 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	FBXL4	Q9UKA2	621 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	A4GNT	Q9UNA3	340 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	SLC35A3	Q9Y2D2	325 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	LYVE1	Q9Y5Y7	322 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823		U3KQV3	271 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823	PCNX3	Q9H6A9	2034 aa		10.83	□□□□□ -0.68
CLN6-223	ENST00000637823		A0A1W2PQD3	144 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823		H3BNH8	94 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	WWP2	O00308	870 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	FRS3	O43559	492 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	TPST2	O60704	377 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	FMO6P	O60774	539 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	SEMA7A	O75326	666 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	OXSR1	O95747	527 aa	Predicted RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	HPR	P00739	348 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	H1F0	P07305	194 aa	Known RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	LIMS1	P48059	325 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	TMED10	P49755	219 aa	Known RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	ALDH3A2	P51648	485 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms