RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GADD45GO95257 159 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 LIMS1P48059 325 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 ZNF141Q15928 474 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 BTBD16Q32M84 506 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 WLSQ5T9L3 541 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 PPP1R32Q7Z5V6 425 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 GALNT5Q7Z7M9 940 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 HIPK1Q86Z02 1210 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 NLGN4XQ8N0W4 816 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 PACRGLQ8N7B6 248 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 NLGN4YQ8NFZ3 816 aaPredicted RBP18.51■□□□□ 0.55
CLN3-250ENST00000636839 OR9Q2Q8NGE9 314 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 DIO2Q92813 273 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 SDCCAG3Q96C92 435 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 OMA1Q96E52 524 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 NAF1Q96HR8 494 aaKnown RBP18.51■□□□□ 0.55
CLN3-250ENST00000636839 CACYBPQ9HB71 228 aaKnown RBP18.51■□□□□ 0.55
CLN3-250ENST00000636839 MAN2C1Q9NTJ4 1040 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 TMEFF2Q9UIK5 374 aaPredicted RBP18.51■□□□□ 0.55
CLN3-250ENST00000636839 ACAD8Q9UKU7 415 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 AP4B1Q9Y6B7 739 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 DCHS1Q96JQ0 3298 aa18.51■□□□□ 0.55
CLN3-250ENST00000636839 LOC101059948A0A1B0GTJ6 334 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 ICOSLGO75144 302 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 UTS2O95399 124 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 THY1P04216 161 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 UQCRBP14927 111 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 MMP11P24347 488 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 POLR2IP36954 125 aaKnown RBP18.5■□□□□ 0.55
CLN3-250ENST00000636839 DLSTP36957 453 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 DCAF7P61962 342 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 PLCXD2Q0VAA5 305 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 SLC5A8Q8N695 610 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 OR5M3Q8NGP4 307 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 IMMP1LQ96LU5 166 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 ZNF700Q9H0M5 742 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 TRIM45Q9H8W5 580 aaPredicted RBP18.5■□□□□ 0.55
CLN3-250ENST00000636839 ZBTB20Q9HC78 741 aaPredicted RBP18.5■□□□□ 0.55
CLN3-250ENST00000636839 KLHL28Q9NXS3 571 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 PCDHGA10Q9Y5H3 936 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 SYNDIG1LA6NDD5 238 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 TO15178 435 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 CLIC3O95833 236 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 RPSAP08865 295 aaKnown RBP18.5■□□□□ 0.55
CLN3-250ENST00000636839 CYP4B1P13584 511 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 ACADSP16219 412 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 HTR2AP28223 471 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 HMGA2P52926 109 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 CD226Q15762 336 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 KLHL26Q53HC5 615 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 FGD3Q5JSP0 725 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 ENTPD8Q5MY95 495 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 RNF220Q5VTB9 566 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 ESX1Q8N693 406 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 ALPK1Q96QP1 1244 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 MCHR1Q99705 422 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 POLR1BQ9H9Y6 1135 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 PCSK5Q92824 1860 aa18.5■□□□□ 0.55
CLN3-250ENST00000636839 TERTO14746 1132 aaKnown RBP18.49■□□□□ 0.55
CLN3-250ENST00000636839 TSPAN2O60636 221 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 RAD1O60671 282 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 UGT2B11O75310 529 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 H1F0P07305 194 aaKnown RBP18.49■□□□□ 0.55
CLN3-250ENST00000636839 GUSBP08236 651 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 CYC1P08574 325 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 GNAO1P09471 354 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 UBTFL6P0CB48 400 aaPredicted RBP18.49■□□□□ 0.55
CLN3-250ENST00000636839 PTNP21246 168 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 STAT5AP42229 794 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 DNASE1L3Q13609 305 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 TGIF1Q15583 401 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 COLEC12Q5KU26 742 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 ISLR2Q6UXK2 745 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 FEVQ99581 238 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 KLHDC3Q9BQ90 382 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 ZNF160Q9HCG1 818 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 DNAJB12Q9NXW2 375 aaKnown RBP18.49■□□□□ 0.55
CLN3-250ENST00000636839 SMPD3Q9NY59 655 aaPredicted RBP18.49■□□□□ 0.55
CLN3-250ENST00000636839 OIP5O43482 229 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 MAN1A2O60476 641 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 CYP7B1O75881 506 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 OXSR1O95747 527 aaPredicted RBP18.49■□□□□ 0.55
CLN3-250ENST00000636839 RAB40ALP0C0E4 278 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 ELAVL4P26378 380 aaKnown RBP18.49■□□□□ 0.55
CLN3-250ENST00000636839 ARHGDIAP52565 204 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 IL1RL1Q01638 556 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 IL10RAQ13651 578 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 FGFBP1Q14512 234 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 MICAQ29983 383 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 SLC7A13Q8TCU3 470 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 ELP5Q8TE02 316 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 ADAMTS16Q8TE57 1224 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 GIPC3Q8TF64 312 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 PMM1Q92871 262 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 DHRS1Q96LJ7 313 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 PRRC1Q96M27 445 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 RBM4BQ9BQ04 359 aaKnown RBP18.49■□□□□ 0.55
CLN3-250ENST00000636839 FNDC11Q9BVV2 318 aa18.49■□□□□ 0.55
CLN3-250ENST00000636839 RBM4Q9BWF3 364 aaKnown RBP18.49■□□□□ 0.55
CLN3-250ENST00000636839 IL17BQ9UHF5 180 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms