RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PSPHP78330 225 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 POU4F1Q01851 419 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 RNPS1Q15287 305 aaKnown RBP12.79□□□□□ -0.36
CLN3-249ENST00000636685 ERCC6LQ2NKX8 1250 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 TREML4Q6UXN2 200 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 CCDC116Q8IYX3 515 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 GTPBP8Q8N3Z3 284 aaPredicted RBP12.79□□□□□ -0.36
CLN3-249ENST00000636685 LINC01356Q8N9X3 169 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 OR9A2Q8NGT5 310 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 ZNF675Q8TD23 568 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 RNF145Q96MT1 663 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 TRMOQ9BU70 441 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 SRXN1Q9BYN0 137 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 PFDN4Q9NQP4 134 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 FAM120CQ9NX05 1096 aaKnown RBP12.79□□□□□ -0.36
CLN3-249ENST00000636685 ADAM29Q9UKF5 820 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 ATP23Q9Y6H3 246 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 ZNF780BQ9Y6R6 833 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 IGLV3-32A0A0A0MS00 114 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 PGM3O95394 542 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 YES1P07947 543 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 GGT1P19440 569 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 IGHV1-2P23083 117 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 PTAFRP25105 342 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 PSMA4P25789 261 aaKnown RBP12.78□□□□□ -0.36
CLN3-249ENST00000636685 ALDH9A1P49189 494 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 CLK3P49761 638 aaKnown RBP12.78□□□□□ -0.36
CLN3-249ENST00000636685 PSG6Q00889 435 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 CHRNEQ04844 493 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 CSTF3Q12996 717 aaKnown RBP12.78□□□□□ -0.36
CLN3-249ENST00000636685 PDSS1Q5T2R2 415 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 APOOLQ6UXV4 268 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 DEF8Q6ZN54 512 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 TBC1D1Q86TI0 1168 aaPredicted RBP12.78□□□□□ -0.36
CLN3-249ENST00000636685 ANKS4BQ8N8V4 417 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 OR52N5Q8NH56 324 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 ZNF418Q8TF45 676 aaPredicted RBP12.78□□□□□ -0.36
CLN3-249ENST00000636685 SLC9A6Q92581 669 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 TM4SF18Q96CE8 201 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 REXO5Q96IC2 774 aaKnown RBP12.78□□□□□ -0.36
CLN3-249ENST00000636685 INPP5KQ9BT40 448 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 PSME2Q9UL46 239 aa12.78□□□□□ -0.36
CLN3-249ENST00000636685 RYR3Q15413 4870 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 NPIPA5A0A0B4J1W7 369 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 A0A1W2PR80 420 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 OR5H1A6NKK0 313 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 GOLGA6L6A8MZA4 724 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 NPIPA7E9PJI5 369 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 TRIM77I1YAP6 450 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 DNALI1O14645 258 aaPredicted RBP12.77□□□□□ -0.37
CLN3-249ENST00000636685 GUCY1B2O75343 617 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 PRKD3O94806 890 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 ANGPTL1O95841 491 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 NPIPA8P0DM63 369 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 APEX1P27695 318 aaKnown RBP12.77□□□□□ -0.37
CLN3-249ENST00000636685 SFTPDP35247 375 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 OR3A2P47893 321 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 RFX3P48380 749 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 C17orf67Q0P5P2 114 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 ZNF155Q12901 538 aaPredicted RBP12.77□□□□□ -0.37
CLN3-249ENST00000636685 FRG1Q14331 258 aaKnown RBP12.77□□□□□ -0.37
CLN3-249ENST00000636685 ZSWIM7Q19AV6 140 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 MST1LQ2TV78 715 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 FCRLAQ7L513 359 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 PAGE2Q7Z2X7 111 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 P2RY8Q86VZ1 359 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 ANKMY2Q8IV38 441 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 STAG3L4Q8TBR4 150 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 MTBPQ96DY7 904 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 FBXO17Q96EF6 278 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 TSPAN17Q96FV3 270 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 UBXN10Q96LJ8 280 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 KLHL15Q96M94 604 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 ATOH8Q96SQ7 321 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 ZNF747Q9BV97 191 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 RBM4Q9BWF3 364 aaKnown RBP12.77□□□□□ -0.37
CLN3-249ENST00000636685 TBL1XR1Q9BZK7 514 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 TEX264Q9Y6I9 313 aa12.77□□□□□ -0.37
CLN3-249ENST00000636685 A0A087WZY1 265 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 C9JVG2 144 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 M0R1B8 84 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 CLDN9O95484 217 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 IL33O95760 270 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 COX5AP20674 150 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 ME2P23368 584 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 APOBEC3AP31941 199 aaPredicted RBP12.76□□□□□ -0.37
CLN3-249ENST00000636685 CDH15P55291 814 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 HILS1P60008 231 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 DLG1Q12959 904 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 SWI5Q1ZZU3 235 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 CPTPQ5TA50 214 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 KLHL17Q6TDP4 642 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 SHISA2Q6UWI4 295 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 SSX8Q7RTT4 187 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 COMMD6Q7Z4G1 85 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 ISCA2Q86U28 154 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 LILRA2Q8N149 483 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 METTL4Q8N3J2 472 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 LRRC17Q8N6Y2 441 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 L3MBTL4Q8NA19 623 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms