RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 TUBB1Q9H4B7 451 aa8.82□□□□□ -1
VRK3-216ENST00000599342 BEX4Q9NWD9 120 aaPredicted RBP8.82□□□□□ -1
VRK3-216ENST00000599342 MKS1Q9NXB0 559 aa8.82□□□□□ -1
VRK3-216ENST00000599342 PAQR5Q9NXK6 330 aaPredicted RBP8.82□□□□□ -1
VRK3-216ENST00000599342 KLHL28Q9NXS3 571 aa8.82□□□□□ -1
VRK3-216ENST00000599342 C6orf203Q9P0P8 240 aaPredicted RBP8.82□□□□□ -1
VRK3-216ENST00000599342 BAIAP2L1Q9UHR4 511 aa8.82□□□□□ -1
VRK3-216ENST00000599342 MCTS1Q9ULC4 181 aaKnown RBP8.82□□□□□ -1
VRK3-216ENST00000599342 PROCRQ9UNN8 238 aa8.82□□□□□ -1
VRK3-216ENST00000599342 EMC9Q9Y3B6 208 aa8.82□□□□□ -1
VRK3-216ENST00000599342 MED12Q93074 2177 aa8.82□□□□□ -1
VRK3-216ENST00000599342 TEP1Q99973 2627 aaKnown RBP8.81□□□□□ -1
VRK3-216ENST00000599342 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.81□□□□□ -1
VRK3-216ENST00000599342 TMEM233B4DJY2 109 aa8.81□□□□□ -1
VRK3-216ENST00000599342 SHISA8B8ZZ34 492 aa8.81□□□□□ -1
VRK3-216ENST00000599342 C16orf97H3BN30 126 aa8.81□□□□□ -1
VRK3-216ENST00000599342 PIP5K1BO14986 540 aa8.81□□□□□ -1
VRK3-216ENST00000599342 SCAMP2O15127 329 aaKnown RBP8.81□□□□□ -1
VRK3-216ENST00000599342 CTIFO43310 598 aaKnown RBP8.81□□□□□ -1
VRK3-216ENST00000599342 KCNK2O95069 426 aa8.81□□□□□ -1
VRK3-216ENST00000599342 SYNGR4O95473 234 aa8.81□□□□□ -1
VRK3-216ENST00000599342 HSPA4LO95757 839 aa8.81□□□□□ -1
VRK3-216ENST00000599342 FGF4P08620 206 aa8.81□□□□□ -1
VRK3-216ENST00000599342 CD8BP10966 210 aa8.81□□□□□ -1
VRK3-216ENST00000599342 ACP2P11117 423 aa8.81□□□□□ -1
VRK3-216ENST00000599342 CD53P19397 219 aa8.81□□□□□ -1
VRK3-216ENST00000599342 ATP6V1C1P21283 382 aa8.81□□□□□ -1
VRK3-216ENST00000599342 TBXA2RP21731 343 aa8.81□□□□□ -1
VRK3-216ENST00000599342 ME2P23368 584 aa8.81□□□□□ -1
VRK3-216ENST00000599342 ALDH3A1P30838 453 aa8.81□□□□□ -1
VRK3-216ENST00000599342 LCN1P31025 176 aa8.81□□□□□ -1
VRK3-216ENST00000599342 UGT2B10P36537 528 aa8.81□□□□□ -1
VRK3-216ENST00000599342 MAP3K8P41279 467 aa8.81□□□□□ -1
VRK3-216ENST00000599342 POU6F2P78424 691 aaPredicted RBP8.81□□□□□ -1
VRK3-216ENST00000599342 MLC1Q15049 377 aa8.81□□□□□ -1
VRK3-216ENST00000599342 DUSP5Q16690 384 aa8.81□□□□□ -1
VRK3-216ENST00000599342 ATP6AP1LQ52LC2 224 aa8.81□□□□□ -1
VRK3-216ENST00000599342 ARL13AQ5H913 290 aaPredicted RBP8.81□□□□□ -1
VRK3-216ENST00000599342 ZNF474Q6S9Z5 364 aaPredicted RBP8.81□□□□□ -1
VRK3-216ENST00000599342 FAM214BQ7L5A3 538 aa8.81□□□□□ -1
VRK3-216ENST00000599342 GGNQ86UU5 652 aa8.81□□□□□ -1
VRK3-216ENST00000599342 WDR75Q8IWA0 830 aaKnown RBP8.81□□□□□ -1
VRK3-216ENST00000599342 BANPQ8N9N5 519 aa8.81□□□□□ -1
VRK3-216ENST00000599342 SLC16A11Q8NCK7 471 aa8.81□□□□□ -1
VRK3-216ENST00000599342 OR4C3Q8NH37 302 aa8.81□□□□□ -1
VRK3-216ENST00000599342 GIMAP5Q96F15 307 aa8.81□□□□□ -1
VRK3-216ENST00000599342 PIK3IP1Q96FE7 263 aa8.81□□□□□ -1
VRK3-216ENST00000599342 OTUB1Q96FW1 271 aaPredicted RBP8.81□□□□□ -1
VRK3-216ENST00000599342 SH3YL1Q96HL8 342 aaPredicted RBP8.81□□□□□ -1
VRK3-216ENST00000599342 WFIKKN1Q96NZ8 548 aa8.81□□□□□ -1
VRK3-216ENST00000599342 MECRQ9BV79 373 aa8.81□□□□□ -1
VRK3-216ENST00000599342 KLHL4Q9C0H6 718 aa8.81□□□□□ -1
VRK3-216ENST00000599342 FANCFQ9NPI8 374 aa8.81□□□□□ -1
VRK3-216ENST00000599342 UBQLN4Q9NRR5 601 aa8.81□□□□□ -1
VRK3-216ENST00000599342 ZCCHC3Q9NUD5 404 aaKnown RBP8.81□□□□□ -1
VRK3-216ENST00000599342 ATAD3AQ9NVI7 634 aa8.81□□□□□ -1
VRK3-216ENST00000599342 NTMQ9P121 344 aa8.81□□□□□ -1
VRK3-216ENST00000599342 TRAF6Q9Y4K3 522 aa8.81□□□□□ -1
VRK3-216ENST00000599342 SNX8Q9Y5X2 465 aa8.81□□□□□ -1
VRK3-216ENST00000599342 ANKHD1Q8IWZ3 2542 aaKnown RBP8.8□□□□□ -1
VRK3-216ENST00000599342 HIVEP1P15822 2718 aa8.8□□□□□ -1
VRK3-216ENST00000599342 A0A1W2PPR1 153 aa8.8□□□□□ -1
VRK3-216ENST00000599342 A0A1W2PQD3 144 aa8.8□□□□□ -1
VRK3-216ENST00000599342 A0A1W2PRB8 838 aa8.8□□□□□ -1
VRK3-216ENST00000599342 PEX11AO75192 247 aa8.8□□□□□ -1
VRK3-216ENST00000599342 SPAG7O75391 227 aa8.8□□□□□ -1
VRK3-216ENST00000599342 AQP8O94778 261 aa8.8□□□□□ -1
VRK3-216ENST00000599342 CGAP01215 116 aa8.8□□□□□ -1
VRK3-216ENST00000599342 BCKDHAP12694 445 aa8.8□□□□□ -1
VRK3-216ENST00000599342 FOSL1P15407 271 aa8.8□□□□□ -1
VRK3-216ENST00000599342 EFNA1P20827 205 aaPredicted RBP8.8□□□□□ -1
VRK3-216ENST00000599342 CRYGSP22914 178 aa8.8□□□□□ -1
VRK3-216ENST00000599342 CCKARP32238 428 aa8.8□□□□□ -1
VRK3-216ENST00000599342 SERPINB5P36952 375 aa8.8□□□□□ -1
VRK3-216ENST00000599342 CTBP2P56545 445 aa8.8□□□□□ -1
VRK3-216ENST00000599342 NKX6-1P78426 367 aaPredicted RBP8.8□□□□□ -1
VRK3-216ENST00000599342 LASP1Q14847 261 aaKnown RBP8.8□□□□□ -1
VRK3-216ENST00000599342 EXOC3L2Q2M3D2 409 aa8.8□□□□□ -1
VRK3-216ENST00000599342 TMEM44Q2T9K0 475 aa8.8□□□□□ -1
VRK3-216ENST00000599342 PLPPR5Q32ZL2 321 aa8.8□□□□□ -1
VRK3-216ENST00000599342 SPDYE7PQ495Y7 208 aa8.8□□□□□ -1
VRK3-216ENST00000599342 PDSS1Q5T2R2 415 aa8.8□□□□□ -1
VRK3-216ENST00000599342 CCNJQ5T5M9 372 aa8.8□□□□□ -1
VRK3-216ENST00000599342 SHEQ5VZ18 495 aa8.8□□□□□ -1
VRK3-216ENST00000599342 ZCCHC23Q6ZST2 131 aa8.8□□□□□ -1
VRK3-216ENST00000599342 ZNF550Q7Z398 422 aa8.8□□□□□ -1
VRK3-216ENST00000599342 TRABD2AQ86V40 505 aa8.8□□□□□ -1
VRK3-216ENST00000599342 P3H2Q8IVL5 708 aa8.8□□□□□ -1
VRK3-216ENST00000599342 GTPBP8Q8N3Z3 284 aaPredicted RBP8.8□□□□□ -1
VRK3-216ENST00000599342 NATD1Q8N6N6 113 aa8.8□□□□□ -1
VRK3-216ENST00000599342 ZNF610Q8N9Z0 462 aa8.8□□□□□ -1
VRK3-216ENST00000599342 FNDC5Q8NAU1 212 aa8.8□□□□□ -1
VRK3-216ENST00000599342 ZNF527Q8NB42 609 aa8.8□□□□□ -1
VRK3-216ENST00000599342 WFDC11Q8NEX6 87 aa8.8□□□□□ -1
VRK3-216ENST00000599342 OR6K3Q8NGY3 331 aa8.8□□□□□ -1
VRK3-216ENST00000599342 OR10D3Q8NH80 312 aa8.8□□□□□ -1
VRK3-216ENST00000599342 OR2W6PQ8NHA6 318 aa8.8□□□□□ -1
VRK3-216ENST00000599342 B4GALNT2Q8NHY0 566 aa8.8□□□□□ -1
VRK3-216ENST00000599342 ACTRT2Q8TDY3 377 aa8.8□□□□□ -1
VRK3-216ENST00000599342 CAVIN3Q969G5 261 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms