RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	ACER3	Q9NUN7	267 aa		10.88	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	FAM120C	Q9NX05	1096 aa	Known RBP	10.88	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TBC1D24	Q9ULP9	559 aa		10.88	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	HSPE1-MOB4	S4R3N1	261 aa		10.88	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ATG2A	Q2TAZ0	1938 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	DOCK8	Q8NF50	2099 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	EFCAB10	A6NFE3	127 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	C2orf74	A8MZ97	194 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	PLD2	O14939	933 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	APOA1	P02647	267 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	HRG	P04196	525 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	BCHE	P06276	602 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	FCER2	P06734	321 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TPO	P07202	933 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SRPRA	P08240	638 aa	Known RBP	10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	CYC1	P08574	325 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	OPRD1	P41143	372 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	LIM2	P55344	173 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	CDK6	Q00534	326 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ELAVL3	Q14576	367 aa	Known RBP	10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SEC23B	Q15437	767 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	GAB4	Q2WGN9	574 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	KBTBD8	Q8NFY9	601 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	CCDC120	Q96HB5	630 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TXNDC15	Q96J42	360 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	FCRL1	Q96LA6	429 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	PCED1A	Q9H1Q7	454 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ZNF576	Q9H609	170 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TM7SF3	Q9NS93	570 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	UFSP2	Q9NUQ7	469 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	C2orf16	Q68DN1	1984 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ANKDD1B	A6NHY2	528 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ADAMDEC1	O15204	470 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	OR10H3	O60404	316 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SOD1	P00441	154 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	IL1RN	P18510	177 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	CD72	P21854	359 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	GPR1	P46091	355 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	AP1S2	P56377	157 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	HOXC5	Q00444	222 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	HSPB3	Q12988	150 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	IL24	Q13007	206 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	GCNT6	Q5T4J0	391 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SLCO4C1	Q6ZQN7	724 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	CPO	Q8IVL8	374 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TCEANC	Q8N8B7	351 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ASCC1	Q8N9N2	400 aa	Known RBP	10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SYT14	Q8NB59	555 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	OR5M1	Q8NGP8	315 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	OR9Q1	Q8NGQ5	310 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	WFIKKN2	Q8TEU8	576 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	GDF15	Q99988	308 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SLC30A2	Q9BRI3	323 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	GABARAPL3	Q9BY60	117 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	RBCK1	Q9BYM8	510 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	DZANK1	Q9NVP4	752 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	CLEC5A	Q9NY25	188 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	CLEC1B	Q9P126	229 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	KLHL20	Q9Y2M5	609 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SLC27A6	Q9Y2P4	619 aa		10.87	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TCF20	Q9UGU0	1960 aa	Known RBP	10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	EDDM13	A0A1B0GTR0	161 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SLC5A10	A0PJK1	596 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	FFAR1	O14842	300 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	OR7A10	O76100	309 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	CCNB2	O95067	398 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ADRB3	P13945	408 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	NPPB	P16860	134 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	RAB25	P57735	213 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TNFRSF17	Q02223	184 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	LIPJ	Q5W064	366 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	GRHL2	Q6ISB3	625 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	PAMR1	Q6UXH9	720 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TECPR1	Q7Z6L1	1165 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TUSC5	Q8IXB3	177 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ZBTB34	Q8NCN2	500 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	FBXW5	Q969U6	566 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	COQ8B	Q96D53	544 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TMEM168	Q9H0V1	697 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TVP23B	Q9NYZ1	205 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	NUFIP1	Q9UHK0	495 aa	Known RBP	10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SRPK3	Q9UPE1	567 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	KLF2	Q9Y5W3	355 aa	Predicted RBP	10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	DOCK9	Q9BZ29	2069 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063		A0A1W2PRV1	198 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SLC35F4	A4IF30	521 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	PPM1D	O15297	605 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	MID1	O15344	667 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	GMFG	O60234	142 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SEMA7A	O75326	666 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	AP2A2	O94973	939 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	HTR3B	O95264	441 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	C1orf105	O95561	183 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	IL3	P08700	152 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ZNF30	P17039	623 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	GABRB1	P18505	474 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	PSMB5	P28074	263 aa		10.86	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TIA1	P31483	386 aa	Known RBP eCLIP	10.86	□□□□□ -0.67	2e-8	■■□□□ 11.4
CDK5RAP3-231	ENST00000584063	MMP12	P39900	470 aa		10.86	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms