RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 NPAS2Q99743 824 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 MGME1Q9BQP7 344 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 MRPL45Q9BRJ2 306 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 C9orf16Q9BUW7 83 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 C1orf50Q9BV19 199 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 GBA3Q9H227 469 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 RPF2Q9H7B2 306 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 NOL11Q9H8H0 719 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 GPN2Q9H9Y4 310 aaPredicted RBP3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 CXorf21Q9HAI6 301 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 MID1IP1Q9NPA3 183 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 CHRAC1Q9NRG0 131 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 IARS2Q9NSE4 1012 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 C20orf96Q9NUD7 363 aaPredicted RBP3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 PLCXD1Q9NUJ7 323 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 ABCB8Q9NUT2 735 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 WSB2Q9NYS7 404 aaPredicted RBP3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 ADA2Q9NZK5 511 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 ACTR3BQ9P1U1 418 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 ZNF639Q9UID6 485 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 PAIP2BQ9ULR5 123 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 B3GALT5Q9Y2C3 310 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 NME7Q9Y5B8 376 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 MGAMO43451 1857 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 COL11A1P12107 1806 aaPredicted RBP3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 PHIPQ8WWQ0 1821 aa3.54□□□□□ -1.84
SMCHD1-208ENST00000583344 LCTP09848 1927 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 LOC102723996A0A087X1L8 192 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 A0A1W2PRV1 198 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 FUOMA2VDF0 154 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 H3BMQ9 156 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 H3BQ06 376 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 EEF2KO00418 725 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 MRASO14807 208 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 PGRMC2O15173 223 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 PLPP2O43688 288 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 MFSD11O43934 449 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 TSPAN1O60635 241 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 ANXA9O76027 345 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 SLCO2B1O94956 709 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 WISP3O95389 354 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 STAMBPO95630 424 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 CPNE6O95741 557 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 EML2O95834 649 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 PGK1P00558 417 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 UGT2B4P06133 528 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 KCNE1P15382 129 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 GATA1P15976 413 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 CKMT2P17540 419 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 TYMPP19971 482 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 WARSP23381 471 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 MAPK3P27361 379 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 NMBRP28336 390 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 ADRA1AP35348 466 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 CAPGP40121 348 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 WNT5AP41221 380 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 CD86P42081 329 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 LEPRP48357 1165 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 SULT1E1P49888 294 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 HLCSP50747 726 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 BCAP31P51572 246 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 HMGCS2P54868 508 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 C21orf59P57076 290 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 SNRPD1P62314 119 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 KCNJ10P78508 379 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 IL1RL1Q01638 556 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 C17orf67Q0P5P2 114 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 RPA4Q13156 261 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 PMS2P3Q13401 168 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 EIF4EBP2Q13542 120 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 KCNC3Q14003 757 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 FASTKQ14296 549 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 C16orf72Q14CZ0 275 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 CYTH1Q15438 398 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 BCL2A1Q16548 175 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 NRF1Q16656 503 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 FAM83EQ2M2I3 478 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 PCGF3Q3KNV8 242 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 DCAF4L1Q3SXM0 396 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 AGKQ53H12 422 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 RBM48Q5RL73 367 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 FAM182AQ5T1J6 154 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 ARMC4Q5T2S8 1044 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 TMEM198Q66K66 360 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 REP15Q6BDI9 236 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 ANKRD26P1Q6NSI1 321 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 TTC33Q6PID6 262 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 ABRAXAS1Q6UWZ7 409 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 PAQR9Q6ZVX9 377 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 CDR2LQ86X02 465 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 PTOV1Q86YD1 416 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 CLVS1Q8IUQ0 354 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 LRRC49Q8IUZ0 686 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 TBC1D21Q8IYX1 336 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 DHRSXQ8N5I4 330 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 RNF148Q8N7C7 305 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 DNAAF3Q8N9W5 541 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 MINDY2Q8NBR6 621 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 SLC38A9Q8NBW4 561 aa3.53□□□□□ -1.84
SMCHD1-208ENST00000583344 CCNYQ8ND76 341 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms