RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PRKD3O94806 890 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 KLK1P06870 262 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 GIFP27352 417 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 OR3A2P47893 321 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 ZNF83P51522 516 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 C17orf67Q0P5P2 114 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 ZNF628Q5EBL2 1059 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 TTC27Q6P3X3 843 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 PAGE2Q7Z2X7 111 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 MARCH3Q86UD3 253 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 IGDCC3Q8IVU1 814 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 CEP112Q8N8E3 955 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 FAM110BQ8TC76 370 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 CPNE4Q96A23 557 aaPredicted RBP15.87■□□□□ 0.13
CLK3-227ENST00000570296 ZBTB8AQ96BR9 441 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 FKRPQ9H9S5 495 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 NUDT4Q9NZJ9 180 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 FLRT3Q9NZU0 649 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 ATP23Q9Y6H3 246 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 ZNF780BQ9Y6R6 833 aa15.87■□□□□ 0.13
CLK3-227ENST00000570296 NDUFB5O43674 189 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 UGDHO60701 494 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 PSMA4P25789 261 aaKnown RBP15.86■□□□□ 0.13
CLK3-227ENST00000570296 MAPK12P53778 367 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 SLC12A2P55011 1212 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 PHC1P78364 1004 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 FOXL1Q12952 345 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 MSS51Q4VC12 460 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 ARL13AQ5H913 290 aaPredicted RBP15.86■□□□□ 0.13
CLK3-227ENST00000570296 CCNYL2Q5T2Q4 361 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 RNASEH2BQ5TBB1 312 aaKnown RBP15.86■□□□□ 0.13
CLK3-227ENST00000570296 WDR20Q8TBZ3 569 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 TRPC4APQ8TEL6 797 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 EXT2Q93063 718 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 CNRIP1Q96F85 164 aaPredicted RBP15.86■□□□□ 0.13
CLK3-227ENST00000570296 KLHL15Q96M94 604 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 ZNF681Q96N22 645 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 SAP130Q9H0E3 1048 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 ANKRA2Q9H9E1 313 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 HHATLQ9HCP6 504 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 PRSS50Q9UI38 385 aa15.86■□□□□ 0.13
CLK3-227ENST00000570296 NPIPA5A0A0B4J1W7 369 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 NPIPA7E9PJI5 369 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 LILRA1O75019 489 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 NME6O75414 186 aaPredicted RBP15.85■□□□□ 0.13
CLK3-227ENST00000570296 SNUPNO95149 360 aaKnown RBP15.85■□□□□ 0.13
CLK3-227ENST00000570296 NPIPA8P0DM63 369 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 IGHV1-2P23083 117 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 SNRPD2P62316 118 aaKnown RBP15.85■□□□□ 0.13
CLK3-227ENST00000570296 POU4F1Q01851 419 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 ILF2Q12905 390 aaKnown RBP15.85■□□□□ 0.13
CLK3-227ENST00000570296 FRG1Q14331 258 aaKnown RBP15.85■□□□□ 0.13
CLK3-227ENST00000570296 OCLNQ16625 522 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 CPSF6Q16630 551 aaKnown RBP eCLIP15.85■□□□□ 0.13
CLK3-227ENST00000570296 MST1LQ2TV78 715 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 CYP27C1Q4G0S4 372 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 CPTPQ5TA50 214 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 SHQ1Q6PI26 577 aaKnown RBP15.85■□□□□ 0.13
CLK3-227ENST00000570296 FCRLAQ7L513 359 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 GLCCI1Q86VQ1 547 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 TBL1XR1Q9BZK7 514 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 RHOJQ9H4E5 214 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 TMEM185BQ9H7F4 350 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 AHSPQ9NZD4 102 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 SPEF1Q9Y4P9 236 aa15.85■□□□□ 0.13
CLK3-227ENST00000570296 GMFGO60234 142 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 STAMBPO95630 424 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 ANGPTL1O95841 491 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 CSTF3Q12996 717 aaKnown RBP15.84■□□□□ 0.13
CLK3-227ENST00000570296 STEAP4Q687X5 459 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 TRABD2AQ86V40 505 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 SLC43A2Q8N370 569 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 TEX9Q8N6V9 391 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 NUP43Q8NFH3 380 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 FBXO17Q96EF6 278 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 CFAP36Q96G28 342 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 RNF145Q96MT1 663 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 SNX18Q96RF0 628 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 SRXN1Q9BYN0 137 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 TSPY26PQ9H489 355 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 BCO1Q9HAY6 547 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 TAS2R9Q9NYW1 312 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 USP22Q9UPT9 525 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 SLC25A15Q9Y619 301 aa15.84■□□□□ 0.13
CLK3-227ENST00000570296 B4DSR2 109 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 M0R1B8 84 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 ALX3O95076 343 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 IL33O95760 270 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 PRR5P85299 388 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 PSG6Q00889 435 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 DECR1Q16698 335 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 LILRA2Q8N149 483 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 SVOPLQ8N434 492 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 ZNF433Q8N7K0 673 aaPredicted RBP15.83■□□□□ 0.12
CLK3-227ENST00000570296 ANKS4BQ8N8V4 417 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 OR52N5Q8NH56 324 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 STAG3L4Q8TBR4 150 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 TSPAN17Q96FV3 270 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 NPAS1Q99742 590 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 MCMBPQ9BTE3 642 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms