RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 HNRNPCL2B2RXH8 293 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 HNRNPCL3B7ZW38 293 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 LRRTM2O43300 516 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 HNRNPCL4P0DMR1 293 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 PSKH1P11801 424 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 SLC1A3P43003 542 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 CAV3P56539 151 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 TSPAN31Q12999 210 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 AGERQ15109 404 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 MZT2AQ6P582 158 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 BHLHB9Q6PI77 547 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 AMZ2Q86W34 360 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 PLCZ1Q86YW0 608 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 CCDC28AQ8IWP9 274 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 GJD3Q8N144 294 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 YIPF7Q8N8F6 280 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 POGLUT1Q8NBL1 392 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 OR5K2Q8NHB8 316 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 JPH3Q8WXH2 748 aaPredicted RBP12.37□□□□□ -0.43
VPS4A-204ENST00000566354 TRAF4Q9BUZ4 470 aaPredicted RBP12.37□□□□□ -0.43
VPS4A-204ENST00000566354 PINK1Q9BXM7 581 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 NIPAL2Q9H841 368 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 SLC35C2Q9NQQ7 365 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 CLCA2Q9UQC9 943 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 GPR52Q9Y2T5 361 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 PCYT1BQ9Y5K3 369 aaPredicted RBP12.37□□□□□ -0.43
VPS4A-204ENST00000566354 BDP1A6H8Y1 2624 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 KNL1Q8NG31 2342 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 FAM240BA0A1B0GVZ2 78 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 ARHGEF9O43307 516 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 LYRM1O43325 122 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 CHST10O43529 356 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 HPGDSO60760 199 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 CHRM4P08173 479 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 CCNYL3P0C7X3 344 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 HAAOP46952 286 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 GZMKP49863 264 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 CDK3Q00526 305 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 ACSM1Q08AH1 577 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 IL18Q14116 193 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 TMEM44Q2T9K0 475 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 CCDC58Q4VC31 144 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 OR4C11Q6IEV9 310 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 PAMR1Q6UXH9 720 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 TMEM64Q6YI46 380 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 RASSF6Q6ZTQ3 369 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 UBE3DQ7Z6J8 389 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 LHFPL3Q86UP9 236 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 ARIH2OSQ8N7S6 290 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 FRMD1Q8N878 549 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 NLGN4YQ8NFZ3 816 aaPredicted RBP12.37□□□□□ -0.43
VPS4A-204ENST00000566354 UCN3Q969E3 161 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 ATF6BQ99941 703 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 TMEM43Q9BTV4 400 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 DPH7Q9BTV6 452 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 BTBD1Q9H0C5 482 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 IFT22Q9H7X7 185 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 ALG5Q9Y673 324 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 OR1F1O43749 312 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 AKAP8O43823 692 aaKnown RBP12.36□□□□□ -0.43
VPS4A-204ENST00000566354 C1QBP02746 253 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 FAM157BP0CG42 384 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 NTSP30990 170 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 PTGS2P35354 604 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 CENPAP49450 140 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 NCBP2P52298 156 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS4A-204ENST00000566354 MRPL28Q13084 256 aaKnown RBP12.36□□□□□ -0.43
VPS4A-204ENST00000566354 TNK1Q13470 666 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 DSG2Q14126 1118 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 EFR3AQ14156 821 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 PRAMEF8Q5VWM4 474 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 PRAMEF7Q5VXH5 474 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 ADAMTSL4Q6UY14 1074 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 UBALD2Q8IYN6 164 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 TSTD1Q8NFU3 115 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 OR8D4Q8NGM9 314 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 COX14Q96I36 57 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 KCNJ15Q99712 375 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 MARVELD1Q9BSK0 173 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 FAIM2Q9BWQ8 316 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 TEX12Q9BXU0 123 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 TPSD1Q9BZJ3 242 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 CTPS2Q9NRF8 586 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 ING3Q9NXR8 418 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 USP36Q9P275 1121 aaKnown RBP12.36□□□□□ -0.43
VPS4A-204ENST00000566354 ADAM30Q9UKF2 790 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 CYP8B1Q9UNU6 501 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 POLHQ9Y253 713 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 PRKAB1Q9Y478 270 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 A0A0A6YYD5 115 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 SGK494L7N484 410 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 SYT5O00445 386 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 SHOXO15266 292 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 IGFALSP35858 605 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 PRKAG1P54619 331 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 CDH11P55287 796 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 CLDN20P56880 219 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 TAS2R41P59536 307 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 FUT5Q11128 374 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 MADCAM1Q13477 382 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms