RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 TMPRSS12Q86WS5 348 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 SIMC1Q8NDZ2 872 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 TOR1AIP2Q8NFQ8 470 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 GNPDA2Q8TDQ7 276 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 Q96MT0 163 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 SAP130Q9H0E3 1048 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 POLE3Q9NRF9 147 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 AGAP5A6NIR3 686 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 TPST2O60704 377 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 ACVR2AP27037 513 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 GABRA4P48169 554 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 SNRPGP62308 76 aaKnown RBP16.51■□□□□ 0.23
SNX1-208ENST00000559844 NFATC3Q12968 1075 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 TBCEQ15813 527 aaPredicted RBP16.51■□□□□ 0.23
SNX1-208ENST00000559844 UBE2UQ5VVX9 321 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 CASP12Q6UXS9 341 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 ZNF595Q8IYB9 648 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 NLGN4XQ8N0W4 816 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 DIO2Q92813 273 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 CMKLR1Q99788 373 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 POLR2J2Q9GZM3 115 aaKnown RBP16.51■□□□□ 0.23
SNX1-208ENST00000559844 OCIAD1Q9NX40 245 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 CNOT2Q9NZN8 540 aaKnown RBP16.51■□□□□ 0.23
SNX1-208ENST00000559844 AKAP7Q9P0M2 348 aaPredicted RBP16.51■□□□□ 0.23
SNX1-208ENST00000559844 GPR55Q9Y2T6 319 aaPredicted RBP16.51■□□□□ 0.23
SNX1-208ENST00000559844 CHST2Q9Y4C5 530 aa16.51■□□□□ 0.23
SNX1-208ENST00000559844 A0A1W2PPW3 197 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 HYKKA2RU49 373 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 EFCAB10A6NFE3 127 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 CLDN4O14493 209 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 FOXS1O43638 330 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 CTNSO60931 367 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 OR5F1O95221 314 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 CTSBP07858 339 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 RPS4Y1P22090 263 aaKnown RBP16.5■□□□□ 0.23
SNX1-208ENST00000559844 MMP11P24347 488 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 PSMB9P28065 219 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 MAP3K8P41279 467 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 AVPR1BP47901 424 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 POU6F2P78424 691 aaPredicted RBP16.5■□□□□ 0.23
SNX1-208ENST00000559844 ENTPD8Q5MY95 495 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 ZNF836Q6ZNA1 936 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 PLEKHM3Q6ZWE6 761 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 ZER1Q7Z7L7 766 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 VWA5B2Q8N398 1253 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 CLIP4Q8N3C7 705 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 STX19Q8N4C7 294 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 LIN37Q96GY3 246 aaPredicted RBP16.5■□□□□ 0.23
SNX1-208ENST00000559844 MCHR1Q99705 422 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 EVA1AQ9H8M9 152 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 IRAK4Q9NWZ3 460 aa16.5■□□□□ 0.23
SNX1-208ENST00000559844 CPSF4LA6NMK7 179 aaKnown RBP16.49■□□□□ 0.23
SNX1-208ENST00000559844 EFCAB7A8K855 629 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 TMEM150CB9EJG8 249 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 CT62P0C5K7 136 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 EMP3P54852 163 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 EEF1A1P68104 462 aaKnown RBP16.49■□□□□ 0.23
SNX1-208ENST00000559844 IGLV3-21P80748 117 aaPredicted RBP16.49■□□□□ 0.23
SNX1-208ENST00000559844 SLC13A2Q13183 592 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 RRM2BQ7LG56 351 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 GALNT12Q8IXK2 581 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 GPR151Q8TDV0 419 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 HOXB13Q92826 284 aaPredicted RBP16.49■□□□□ 0.23
SNX1-208ENST00000559844 YIPF6Q96EC8 236 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 OR6C1Q96RD1 312 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 ARMC7Q9H6L4 198 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 CTPS2Q9NRF8 586 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 FGF21Q9NSA1 209 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 SIDT1Q9NXL6 827 aaKnown RBP16.49■□□□□ 0.23
SNX1-208ENST00000559844 HCN3Q9P1Z3 774 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 LOXL2Q9Y4K0 774 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 HYAL3O43820 417 aaPredicted RBP16.49■□□□□ 0.23
SNX1-208ENST00000559844 KIAA0513O60268 411 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 NKX2-2O95096 273 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 GABARAPO95166 117 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 SOX14O95416 240 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 GUSBP08236 651 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 ACY1Q03154 408 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 STX4Q12846 297 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 ZNF155Q12901 538 aaPredicted RBP16.49■□□□□ 0.23
SNX1-208ENST00000559844 EXOSC7Q15024 291 aaKnown RBP16.49■□□□□ 0.23
SNX1-208ENST00000559844 GPR68Q15743 365 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 TMEM201Q5SNT2 666 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 ZNF730Q6ZMV8 503 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 SLC16A12Q6ZSM3 486 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 RAB11FIP2Q7L804 512 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 RANBP3LQ86VV4 465 aaPredicted RBP16.49■□□□□ 0.23
SNX1-208ENST00000559844 MARCH9Q86YJ5 346 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 OR52R1Q8NGF1 315 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 C9orf43Q8TAL5 461 aaPredicted RBP16.49■□□□□ 0.23
SNX1-208ENST00000559844 PRTFDC1Q9NRG1 225 aa16.49■□□□□ 0.23
SNX1-208ENST00000559844 A0A087WUU8 490 aa16.48■□□□□ 0.23
SNX1-208ENST00000559844 FRS3O43559 492 aa16.48■□□□□ 0.23
SNX1-208ENST00000559844 MED26O95402 600 aa16.48■□□□□ 0.23
SNX1-208ENST00000559844 BCL10O95999 233 aa16.48■□□□□ 0.23
SNX1-208ENST00000559844 TP53P04637 393 aaPredicted RBP16.48■□□□□ 0.23
SNX1-208ENST00000559844 MSL3P1P0C860 447 aa16.48■□□□□ 0.23
SNX1-208ENST00000559844 PIPP12273 146 aaPredicted RBP16.48■□□□□ 0.23
SNX1-208ENST00000559844 CCL4P13236 92 aa16.48■□□□□ 0.23
SNX1-208ENST00000559844 NUDT6P53370 316 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms