RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MAP3K8P41279 467 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 PSMD4P55036 377 aaKnown RBP11.77□□□□□ -0.53
SHMT2-229ENST00000557348 DMWDQ09019 674 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 ZNF155Q12901 538 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-229ENST00000557348 NR0B2Q15466 257 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 DUSP5Q16690 384 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 ZFP69Q49AA0 526 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 CYP27C1Q4G0S4 372 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 TRMT12Q53H54 448 aaKnown RBP11.77□□□□□ -0.53
SHMT2-229ENST00000557348 DCST2Q5T1A1 773 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 PEAR1Q5VY43 1037 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-229ENST00000557348 TIGD3Q6B0B8 471 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 CD300LDQ6UXZ3 194 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 GDPGP1Q6ZNW5 385 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 VASH1Q7L8A9 365 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-229ENST00000557348 B3GNT8Q7Z7M8 397 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 RANBP3LQ86VV4 465 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-229ENST00000557348 D2HGDHQ8N465 521 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 TMEM52Q8NDY8 209 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 CEP76Q8TAP6 659 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 CDS1Q92903 461 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 RIT1Q92963 219 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 MMABQ96EY8 250 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-229ENST00000557348 SDF2Q99470 211 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 LMF2Q9BU23 707 aaKnown RBP11.77□□□□□ -0.53
SHMT2-229ENST00000557348 UCK2Q9BZX2 261 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 ABCB10Q9NRK6 738 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 CUTCQ9NTM9 273 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 C14orf105Q9NVL8 296 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 IMPAD1Q9NX62 359 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 SERTAD3Q9UJW9 196 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 PILRBQ9UKJ0 227 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 A4GNTQ9UNA3 340 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 ZNF443Q9Y2A4 671 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-229ENST00000557348 SPTBN5Q9NRC6 3674 aaKnown RBP11.76□□□□□ -0.53
SHMT2-229ENST00000557348 A0A1B0GTQ1 180 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 HRO43593 1189 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 HCRTR1O43613 425 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 AIREO43918 545 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 KIAA0513O60268 411 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 PCDHGA12O60330 932 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 FMO6PO60774 539 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 OR5F1O95221 314 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 CCNYL3P0C7X3 344 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 OSMP13725 252 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 RPS4Y1P22090 263 aaKnown RBP11.76□□□□□ -0.53
SHMT2-229ENST00000557348 TGFBR2P37173 567 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 PDX1P52945 283 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 RGS8P57771 180 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-229ENST00000557348 OR1D5P58170 312 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 TAS2R41P59536 307 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 VBP1P61758 197 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 SNRPNP63162 240 aaKnown RBP11.76□□□□□ -0.53
SHMT2-229ENST00000557348 ALDH6A1Q02252 535 aaKnown RBP11.76□□□□□ -0.53
SHMT2-229ENST00000557348 ID2Q02363 134 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 MGAT2Q10469 447 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 TRAM2Q15035 370 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 ANKRD34AQ69YU3 496 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 DESI1Q6ICB0 168 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 TYW3Q6IPR3 259 aaKnown RBP11.76□□□□□ -0.53
SHMT2-229ENST00000557348 ZNF770Q6IQ21 691 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-229ENST00000557348 FAM181AQ8N9Y4 354 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 ZNF540Q8NDQ6 660 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 OR4C6Q8NH72 309 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 EDAQ92838 391 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 NAT6Q93015 286 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 PEX11GQ96HA9 241 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 DEPDC7Q96QD5 511 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 NDC1Q9BTX1 674 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 NUAK2Q9H093 628 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 STMN3Q9NZ72 180 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 HCN3Q9P1Z3 774 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 SRPK3Q9UPE1 567 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 CAB39Q9Y376 341 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-229ENST00000557348 PCDHGB6Q9Y5F9 930 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 PCDHGA6Q9Y5G7 932 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 N6AMT1Q9Y5N5 214 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 KCNE3Q9Y6H6 103 aa11.76□□□□□ -0.53
SHMT2-229ENST00000557348 SH3D21A4FU49 640 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 TMEM150CB9EJG8 249 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 FAM227AF5H4B4 570 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 DNAJB6O75190 326 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 NME6O75414 186 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-229ENST00000557348 ANKRD34CP0C6C1 535 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 AGXTP21549 392 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 CD1CP29017 333 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 PTGER1P34995 402 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 CRISP1P54107 249 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 OR2B6P58173 313 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 MRPS15P82914 257 aaKnown RBP11.75□□□□□ -0.53
SHMT2-229ENST00000557348 ILKQ13418 452 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 SIGIRRQ6IA17 410 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 OR9Q2Q8NGE9 314 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 OR6T1Q8NGN1 323 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 OR51Q1Q8NH59 317 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 GPR151Q8TDV0 419 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 NECAB3Q96P71 396 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-229ENST00000557348 NIPSNAP1Q9BPW8 284 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 FUZQ9BT04 418 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 G6PC3Q9BUM1 346 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms