RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	FAM69A	Q5T7M9	428 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	LRRC28	Q86X40	367 aa	Predicted RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR2AJ1	Q8NGZ0	328 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	CD99L2	Q8TCZ2	262 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	TFG	Q92734	400 aa	Predicted RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	PDLIM5	Q96HC4	596 aa	Known RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	CASD1	Q96PB1	797 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR2M2	Q96R28	347 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	TMEM43	Q9BTV4	400 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	POLDIP3	Q9BY77	421 aa	Known RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZDHHC4	Q9NPG8	344 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	B3GAT2	Q9NPZ5	323 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	TLR9	Q9NR96	1032 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	SEMA4G	Q9NTN9	838 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	SDHAF2	Q9NX18	166 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	IL17C	Q9P0M4	197 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	FLVCR2	Q9UPI3	526 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	MEMO1	Q9Y316	297 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	DUXA	A6NLW8	204 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005		H3BQ06	376 aa	Predicted RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	KLK8	O60259	260 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	UGDH	O60701	494 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	RBBP9	O75884	186 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	AGR2	O95994	175 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	C1QB	P02746	253 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	SFTPB	P07988	381 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	ACR	P10323	421 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	SRC	P12931	536 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	GRK5	P34947	590 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	AQP2	P41181	271 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	SUOX	P51687	545 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	CLDN12	P56749	244 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	NRG3	P56975	720 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	RAB2A	P61019	212 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	TIAL1	Q01085	375 aa	Known RBP eCLIP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	INSL4	Q14641	139 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	NNAT	Q16517	81 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF805	Q5CZA5	627 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	TPGS2	Q68CL5	300 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	SFXN4	Q6P4A7	337 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	FAM122C	Q6P4D5	195 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	UNC5D	Q6UXZ4	953 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	GDPGP1	Q6ZNW5	385 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	KCTD20	Q7Z5Y7	419 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	DCUN1D3	Q8IWE4	304 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	BBS1	Q8NFJ9	593 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR8J2	Q8NGG1	315 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	CNOT9	Q92600	299 aa	Known RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	S100PBP	Q96BU1	408 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	HAVCR1	Q96D42	359 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	METTL2A	Q96IZ6	378 aa	Known RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	EIF5A2	Q9GZV4	153 aa	Known RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	A4GALT	Q9NPC4	353 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	POT1	Q9NUX5	634 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	TMEM30A	Q9NV96	361 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	TMEM202	A6NGA9	273 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005		F5H0A9	414 aa	Predicted RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	SC5D	O75845	299 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	C1orf105	O95561	183 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	PLG	P00747	810 aa	Predicted RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	DBI	P07108	87 aa	Known RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	PTPN2	P17706	415 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	RAD52	P43351	418 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	KIR2DL3	P43628	341 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	HTR3A	P46098	478 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	CTSC	P53634	463 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	FGL1	Q08830	312 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	GBX1	Q14549	363 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	ALG11	Q2TAA5	492 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	PGGHG	Q32M88	737 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	MLIP	Q5VWP3	458 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	FAHD1	Q6P587	224 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	ENPP7	Q6UWV6	458 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF619	Q8N2I2	560 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	LRRC25	Q8N386	305 aa	Predicted RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	LINC01465	Q8N7H1	131 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR7G3	Q8NG95	312 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	LGALS14	Q8TCE9	139 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	SLC38A5	Q8WUX1	472 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	SLC39A13	Q96H72	371 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	GPR174	Q9BXC1	333 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	ARHGAP39	Q9C0H5	1083 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	CXorf36	Q9H7Y0	433 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	PELI2	Q9HAT8	420 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	STARD5	Q9NSY2	213 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	RBFOX1	Q9NWB1	397 aa	Known RBP	4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005		Q9Y3F1	56 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	WDR45	Q9Y484	360 aa		4.69	□□□□□ -1.66
SYNE2-223	ENST00000557005	MN1	Q10571	1320 aa	Predicted RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	LEUTX	A8MZ59	168 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	DOK2	O60496	412 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SOX30	O94993	753 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	UBB	P0CG47	229 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	UBC	P0CG48	685 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	PPP3CB	P16298	524 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF823	P16415	610 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	CXCR1	P25024	350 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	HSD11B1	P28845	292 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SLC1A3	P43003	542 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SNRPG	P62308	76 aa	Known RBP	4.68	□□□□□ -1.66

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