RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 CNIH3Q8TBE1 160 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 M1APQ8TC57 530 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 AENQ8WTP8 325 aaKnown RBP4.05□□□□□ -1.76
SCFD1-209ENST00000553280 SDSLQ96GA7 329 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 SLC6A7Q99884 636 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 GON7Q9BXV9 100 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 GCOM2Q9BZD3 368 aaPredicted RBP4.05□□□□□ -1.76
SCFD1-209ENST00000553280 FN3KRPQ9HA64 309 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 FAM120CQ9NX05 1096 aaKnown RBP4.05□□□□□ -1.76
SCFD1-209ENST00000553280 HYPKQ9NX55 129 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 ELOVL2Q9NXB9 296 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 NPIPA1Q9UND3 350 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 NTNG1Q9Y2I2 539 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 PNPLA6Q8IY17 1366 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 FRMPD4Q14CM0 1322 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 XKRY2A2RUG3 117 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 H0Y8G0 127 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 LCMT2O60294 686 aaKnown RBP4.04□□□□□ -1.76
SCFD1-209ENST00000553280 H2BFMP0C1H6 154 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 DPEP1P16444 411 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 ATP5A1P25705 553 aaKnown RBP4.04□□□□□ -1.76
SCFD1-209ENST00000553280 MT3P25713 68 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 ETV5P41161 510 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 GRIA1P42261 906 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 AP3M2P53677 418 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 CD300CQ08708 224 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 RIPPLY1Q0D2K3 151 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 COX10Q12887 443 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 CYP51A1Q16850 503 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 TMEM44Q2T9K0 475 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 CNPY1Q3B7I2 92 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 SNAI3Q3KNW1 292 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 LGSNQ5TDP6 509 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 ZSCAN25Q6NSZ9 544 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 FAAP20Q6NZ36 180 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 ZYG11AQ6WRX3 759 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 ERICH1Q86X53 443 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 TMEM123Q8N131 208 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 LRRC75A-AS1Q8N1F1 130 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 CSNK1G2-AS1Q8NCQ2 148 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 STXBP6Q8NFX7 210 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 OR4D5Q8NGN0 318 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 OR8J1Q8NGP2 316 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 RNF139Q8WU17 664 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 NT5C3BQ969T7 300 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 PELI1Q96FA3 418 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 C12orf66Q96MD2 445 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 LRRC61Q9BV99 259 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 DUSP16Q9BY84 665 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 MAGT1Q9H0U3 335 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 TM9SF3Q9HD45 589 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 EXOSC3Q9NQT5 275 aaKnown RBP4.04□□□□□ -1.76
SCFD1-209ENST00000553280 UFSP2Q9NUQ7 469 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 ZNF221Q9UK13 617 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 NAALAD2Q9Y3Q0 740 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 USP6P35125 1406 aa4.04□□□□□ -1.76
SCFD1-209ENST00000553280 OR6C65A6NJZ3 312 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 PCP4L1A6NKN8 68 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 CYSRT1A8MQ03 144 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 H7C423 109 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 MSH4O15457 936 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 SCGNO76038 276 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 F10P00742 488 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 LAP3P28838 519 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 HPCAL1P37235 193 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 GNPDA1P46926 289 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 FGL1Q08830 312 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 ELAVL3Q14576 367 aaKnown RBP4.03□□□□□ -1.76
SCFD1-209ENST00000553280 MXD4Q14582 209 aaPredicted RBP4.03□□□□□ -1.76
SCFD1-209ENST00000553280 ZNF506Q5JVG8 444 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 FAM120AOSQ5T036 256 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 ACSM5Q6NUN0 579 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 Q6ZPB1 254 aaPredicted RBP4.03□□□□□ -1.76
SCFD1-209ENST00000553280 NLRP9Q7RTR0 991 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 APTXQ7Z2E3 356 aaKnown RBP4.03□□□□□ -1.76
SCFD1-209ENST00000553280 ZNF329Q86UD4 541 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 ABHD12Q8N2K0 398 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 OR10A7Q8NGE5 316 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 OR5D13Q8NGL4 314 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 IL1F10Q8WWZ1 152 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 PIWIL1Q96J94 861 aaKnown RBP4.03□□□□□ -1.76
SCFD1-209ENST00000553280 NPAS2Q99743 824 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 HEXA-AS1Q9H8Q6 139 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 RAB18Q9NP72 206 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 SMOXQ9NWM0 555 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 EHFQ9NZC4 300 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 AIPL1Q9NZN9 384 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 PCSK1NQ9UHG2 260 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 CTNNA3Q9UI47 895 aa4.03□□□□□ -1.76
SCFD1-209ENST00000553280 FAM240BA0A1B0GVZ2 78 aa4.02□□□□□ -1.77
SCFD1-209ENST00000553280 NDUFAF8A1L188 74 aa4.02□□□□□ -1.77
SCFD1-209ENST00000553280 LINC01565O15544 149 aa4.02□□□□□ -1.77
SCFD1-209ENST00000553280 MELTFP08582 738 aa4.02□□□□□ -1.77
SCFD1-209ENST00000553280 PNMTP11086 282 aa4.02□□□□□ -1.77
SCFD1-209ENST00000553280 DBTP11182 482 aaKnown RBP4.02□□□□□ -1.77
SCFD1-209ENST00000553280 PCMT1P22061 227 aa4.02□□□□□ -1.77
SCFD1-209ENST00000553280 OR1D4P47884 311 aa4.02□□□□□ -1.77
SCFD1-209ENST00000553280 RPL8P62917 257 aaKnown RBP4.02□□□□□ -1.77
SCFD1-209ENST00000553280 PAX8Q06710 450 aa4.02□□□□□ -1.77
SCFD1-209ENST00000553280 FCHO2Q0JRZ9 810 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms