RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 TBCEQ15813 527 aaPredicted RBP7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 SYTL3Q4VX76 610 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 USP53Q70EK8 1073 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 RDH10Q8IZV5 341 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 NR4A3Q92570 626 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 TMEM159Q96B96 161 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 FAM120BQ96EK7 910 aaKnown RBP7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 PYURFQ96I23 114 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 PPP3R2Q96LZ3 170 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 OR4K3Q96R72 315 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 MAP3K3Q99759 626 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 PRRX2Q99811 253 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 TRMT61BQ9BVS5 477 aaKnown RBP7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 C1QTNF6Q9BXI9 259 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 GALNT9Q9HCQ5 603 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 DCAF13Q9NV06 445 aaKnown RBP7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 STOX2Q9P2F5 926 aaPredicted RBP7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 TRAPPC4Q9Y296 219 aa7.5□□□□□ -1.21
PDLIM5-221ENST00000542407 FAM240BA0A1B0GVZ2 78 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 ANHXE9PGG2 379 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 H7C1Q1 480 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 FRS3O43559 492 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 SEC22BO75396 215 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 SCELO95171 688 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 LY86O95711 162 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 CSF3P09919 207 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 HIST1H2AGP0C0S8 130 aaPredicted RBP7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 HIST1H2ADP20671 130 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 ITPKAP23677 461 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 IMPA1P29218 277 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 HTR4Q13639 388 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 FGFBP1Q14512 234 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 PTGR1Q14914 329 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 AGERQ15109 404 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 CST6Q15828 149 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 FAM174BQ3ZCQ3 159 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 SPDYE7PQ495Y7 208 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 SLC35F1Q5T1Q4 408 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 KDM4DQ6B0I6 523 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 OR2T5Q6IEZ7 315 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 ABI3BPQ7Z7G0 1075 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 ANKRD46Q86W74 232 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 ADGRG3Q86Y34 549 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 OR2L5Q8NG80 312 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 OR2T29Q8NH02 315 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 OR56A3Q8NH54 315 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 CXorf40AQ8TE69 158 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 SLC39A7Q92504 469 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 REPS1Q96D71 796 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 HIST1H2AHQ96KK5 128 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 DCLRE1CQ96SD1 692 aaKnown RBP7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 HIST1H2AJQ99878 128 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 H2AFJQ9BTM1 129 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 MED18Q9BUE0 208 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 DPCDQ9BVM2 203 aaPredicted RBP7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 SHARPINQ9H0F6 387 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 ATG10Q9H0Y0 220 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 COPZ2Q9P299 210 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 SPASTQ9UBP0 616 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 MLXQ9UH92 298 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 RPH3ALQ9UNE2 315 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 DLGAP4Q9Y2H0 992 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 MYL12BO14950 172 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 CASC3O15234 703 aaKnown RBP7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 FABP7O15540 132 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 RGS14O43566 566 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 GALR2O43603 387 aaPredicted RBP7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 C1orf105O95561 183 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 ACADMP11310 421 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 MYL12AP19105 171 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 ACADLP28330 430 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 MPIP34949 423 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 THBS2P35442 1172 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 WASP42768 502 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 TNFRSF4P43489 277 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 PER3P56645 1201 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 RPL38P63173 70 aaKnown RBP7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 RPA4Q13156 261 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 FGL2Q14314 439 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 CPSF6Q16630 551 aaKnown RBP eCLIP7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 TMEM35AQ53FP2 167 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 OR2B11Q5JQS5 317 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 C9orf152Q5JTZ5 239 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 FAM46CQ5VWP2 391 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 LIPJQ5W064 366 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 SAXO2Q658L1 398 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 TCEAL6Q6IPX3 200 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 KIAA1211LQ6NV74 962 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 TEX261Q6UWH6 196 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 FAM83HQ6ZRV2 1179 aaPredicted RBP7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 ZNF605Q86T29 641 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 LHFPL3Q86UP9 236 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 KRT78Q8N1N4 520 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 C19orf18Q8NEA5 215 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 OR7G3Q8NG95 312 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 ZNF431Q8TF32 576 aaPredicted RBP7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 EAF1Q96JC9 268 aaPredicted RBP7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 FCRL1Q96LA6 429 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 MGLLQ99685 303 aa7.49□□□□□ -1.21
PDLIM5-221ENST00000542407 TXN2Q99757 166 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms