RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 MSS51Q4VC12 460 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 ZNF628Q5EBL2 1059 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 PDSS1Q5T2R2 415 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 FAM180BQ6P0A1 224 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 NUP43Q8NFH3 380 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 FAM110BQ8TC76 370 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 ZNF675Q8TD23 568 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 ZNF681Q96N22 645 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 NAT9Q9BTE0 207 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 SRXN1Q9BYN0 137 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 POPDC3Q9HBV1 291 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 OPTCQ9UBM4 332 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 SPEF1Q9Y4P9 236 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 SLC25A15Q9Y619 301 aa12.16□□□□□ -0.46
NKX3-1-202ENST00000523261 BCAS2O75934 225 aaPredicted RBP12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 PRKD3O94806 890 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 KLK1P06870 262 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 HKR1P10072 659 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 EPHA1P21709 976 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 PHC1P78364 1004 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 TTC27Q6P3X3 843 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 UGT2A3Q6UWM9 527 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 THSD4Q6ZMP0 1018 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 GLCCI1Q86VQ1 547 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 ZNF433Q8N7K0 673 aaPredicted RBP12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 OR52N5Q8NH56 324 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 EXT2Q93063 718 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 CPNE4Q96A23 557 aaPredicted RBP12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 KLHL29Q96CT2 875 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 CNRIP1Q96F85 164 aaPredicted RBP12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 REXO5Q96IC2 774 aaKnown RBP12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 KLHL15Q96M94 604 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 RNF145Q96MT1 663 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 ESM1Q9NQ30 184 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 USP22Q9UPT9 525 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 OR10H1Q9Y4A9 318 aa12.15□□□□□ -0.46
NKX3-1-202ENST00000523261 A0A087WZY1 265 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 C7orf72A4D263 438 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 M0R1B8 84 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 FOXE1O00358 373 aaPredicted RBP12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 NDUFB5O43674 189 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 SNUPNO95149 360 aaKnown RBP12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 S100BP04271 92 aaPredicted RBP12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 CD1DP15813 335 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 ZFP36P26651 326 aaKnown RBP12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 SHC1P29353 583 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 PSG6Q00889 435 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 CHRNEQ04844 493 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 C17orf67Q0P5P2 114 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 CSTF3Q12996 717 aaKnown RBP12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 CCNYL2Q5T2Q4 361 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 CPTPQ5TA50 214 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 LIPJQ5W064 366 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 SHQ1Q6PI26 577 aaKnown RBP12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 APOOLQ6UXV4 268 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 FCRLAQ7L513 359 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 ZDHHC22Q8N966 263 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 TRIM58Q8NG06 486 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 WDR20Q8TBZ3 569 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 UBTD2Q8WUN7 234 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 ERP27Q96DN0 273 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 VRK1Q99986 396 aaPredicted RBP12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 SAP130Q9H0E3 1048 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 BCO1Q9HAY6 547 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 ING1Q9UK53 422 aaPredicted RBP12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 ADAM29Q9UKF5 820 aa12.14□□□□□ -0.47
NKX3-1-202ENST00000523261 A0A1W2PR80 420 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 B4DSR2 109 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 RAD51DO75771 328 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 SLU7O95391 586 aaKnown RBP12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 ANGPTL1O95841 491 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 ME2P23368 584 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 CLK3P49761 638 aaKnown RBP12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 MAPK12P53778 367 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 MANFP55145 182 aaKnown RBP12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 ATP6V0D1P61421 351 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 SNRPD2P62316 118 aaKnown RBP12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 CCNIQ14094 377 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 CPSF6Q16630 551 aaKnown RBP eCLIP12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 ERCC6LQ2NKX8 1250 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 ARL13AQ5H913 290 aaPredicted RBP12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 SLC46A3Q7Z3Q1 461 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 PPIL6Q8IXY8 311 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 POC1BQ8TC44 478 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 FBF1Q8TES7 1133 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 SLC9A6Q92581 669 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 ZBTB8AQ96BR9 441 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 SERPINI1Q99574 410 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 TSPY26PQ9H489 355 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 CXorf36Q9H7Y0 433 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 FKRPQ9H9S5 495 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 HIF1ANQ9NWT6 349 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 MED29Q9NX70 200 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 PSME2Q9UL46 239 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 RYR3Q15413 4870 aa12.13□□□□□ -0.47
NKX3-1-202ENST00000523261 A0A1W2PRB8 838 aa12.12□□□□□ -0.47
NKX3-1-202ENST00000523261 CLDN9O95484 217 aa12.12□□□□□ -0.47
NKX3-1-202ENST00000523261 IL33O95760 270 aa12.12□□□□□ -0.47
NKX3-1-202ENST00000523261 PGCP20142 388 aa12.12□□□□□ -0.47
NKX3-1-202ENST00000523261 SFTPDP35247 375 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms