RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 YIPF2Q9BWQ6 316 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 MND1Q9BWT6 205 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 POLDIP3Q9BY77 421 aaKnown RBP6.44□□□□□ -1.38
USP39-219ENST00000496047 WDR12Q9GZL7 423 aaKnown RBP6.44□□□□□ -1.38
USP39-219ENST00000496047 FOLH1BQ9HBA9 442 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 PLGRKTQ9HBL7 147 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 MED17Q9NVC6 651 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 RLIMQ9NVW2 624 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 H2AFY2Q9P0M6 372 aaPredicted RBP6.44□□□□□ -1.38
USP39-219ENST00000496047 HCN3Q9P1Z3 774 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 LRIT1Q9P2V4 623 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 NDOR1Q9UHB4 597 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 SERTAD3Q9UJW9 196 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 MKLN1Q9UL63 735 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.44□□□□□ -1.38
USP39-219ENST00000496047 SRPK3Q9UPE1 567 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 OR10H1Q9Y4A9 318 aa6.44□□□□□ -1.38
USP39-219ENST00000496047 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 PRAMEF27A3QJZ7 478 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 FITM1A5D6W6 292 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 ANKRD33BA6NCL7 494 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 PRAMEF25A6NGN4 478 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 E9PQ18 207 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 FFAR1O14842 300 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 POLR1CO15160 346 aaPredicted RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 TOX3O15405 576 aaPredicted RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 BRINP1O60477 761 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 TPST2O60704 377 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 SDC3O75056 442 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 WBP4O75554 376 aaKnown RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 OR2B3O76000 313 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 INMTO95050 263 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 RCBTB2O95199 551 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 SOX14O95416 240 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 RAB36O95755 333 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 RECKO95980 971 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 HMGN1P05114 100 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 HPGDP15428 266 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 CD36P16671 472 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 FBLP22087 321 aaKnown RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 RPS4Y1P22090 263 aaKnown RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 MMP11P24347 488 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 FPR3P25089 353 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 MAOBP27338 520 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 LCN1P31025 176 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 CSTF2P33240 577 aaKnown RBP eCLIP6.43□□□□□ -1.38
USP39-219ENST00000496047 PTGER1P34995 402 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 SOX6P35712 828 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 ID4P47928 161 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 RFX3P48380 749 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 DHPSP49366 369 aaPredicted RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 PCYT1AP49585 367 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 GPR143P51810 404 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 COPZ1P61923 177 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 PPP1CAP62136 330 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 TUBA1BP68363 451 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 IGLV3-21P80748 117 aaPredicted RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 ST3GAL4Q11206 333 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 GAS6Q14393 721 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 NCF4Q15080 339 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 SNAPC1Q16533 368 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 TIGD6Q17RP2 521 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 TRMT12Q53H54 448 aaKnown RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 ARMC4Q5T2S8 1044 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 MRPL2Q5T653 305 aaKnown RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 HLA-DQA1Q5Y7H0 255 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 AP1ARQ63HQ0 302 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 GTF2IRD2BQ6EKJ0 949 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 ZNF770Q6IQ21 691 aaPredicted RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 MBOAT2Q6ZWT7 520 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 USP43Q70EL4 1123 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 TUBA1AQ71U36 451 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 PRSS41Q7RTY9 318 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 PRSS42Q7Z5A4 293 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 BMP8AQ7Z5Y6 402 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 GTF2IRD2Q86UP8 949 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 C17orf82Q86X59 251 aaPredicted RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 LACC1Q8IV20 430 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 GID4Q8IVV7 300 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 SLITRK4Q8IW52 837 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 TMEFF1Q8IYR6 380 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 OR5T3Q8NGG3 340 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 APH1BQ8WW43 257 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 DIO2Q92813 273 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 GGHQ92820 318 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 ANKRD9Q96BM1 317 aaPredicted RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 CTHRC1Q96CG8 243 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 TMEM80Q96HE8 168 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 ZNF285Q96NJ3 590 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 CCNL2Q96S94 520 aaPredicted RBP6.43□□□□□ -1.38
USP39-219ENST00000496047 ALOXE3Q9BYJ1 711 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 TRIM2Q9C040 744 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 HOXD1Q9GZZ0 328 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 CAPN10Q9HC96 672 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 FAM60AQ9NP50 221 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 HMG20AQ9NP66 347 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 PALMDQ9NP74 551 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 STARD5Q9NSY2 213 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 CUTCQ9NTM9 273 aa6.43□□□□□ -1.38
USP39-219ENST00000496047 PAK1IP1Q9NWT1 392 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms