RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SLC30A6Q6NXT4 461 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 ZC3H14Q6PJT7 736 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 ZNF595Q8IYB9 648 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 HSPA12BQ96MM6 686 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 PRTFDC1Q9NRG1 225 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 MRPS18AQ9NVS2 196 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 ZNF223Q9UK11 482 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 CLDN16Q9Y5I7 305 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 IGHV5-51A0A0C4DH38 117 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 BLACEA4D250 179 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 KDM4EB2RXH2 506 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 LMO7DNF2Z398 122 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 HRKO00198 91 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 CDC42EP2O14613 210 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 DSCR3O14972 297 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 HBQ1P09105 142 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 ERV3-1Q14264 604 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 TIMM50Q3ZCQ8 353 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 ZNF404Q494X3 552 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 FLYWCH1Q4VC44 716 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 OR6C4Q8NGE1 309 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 B4GALNT2Q8NHY0 566 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 C1orf216Q8TAB5 229 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 ADAMTS18Q8TE60 1221 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 KRCC1Q9NPI7 259 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 CDH10Q9Y6N8 788 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 CACNA1IQ9P0X4 2223 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 CEP192Q8TEP8 1941 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 TLCD2A6NGC4 264 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 SDC3O75056 442 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 SOX30O94993 753 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 SSTR4P31391 388 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 SOX3P41225 446 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 FNTBP49356 437 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 PPM1FP49593 454 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 HNRNPKP61978 463 aaKnown RBP eCLIP19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 KLHL22Q53GT1 634 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 OGFOD3Q6PK18 319 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 CLDN22Q8N7P3 220 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 ANKK1Q8NFD2 765 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 RBM18Q96H35 190 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 SOHLH2Q9NX45 425 aa19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 CCDC59Q9P031 241 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-208ENST00000492980 MYL12BO14950 172 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 SURF4O15260 269 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 ENDOUP21128 410 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 RFX3P48380 749 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 RPS3AP61247 264 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 BTG2P78543 158 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 ITGADQ13349 1161 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 ZNHIT3Q15649 155 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 INAQ16352 499 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 PGGHGQ32M88 737 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 MINDY4Q4G0A6 757 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 GARNL3Q5VVW2 1013 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 PTCRAQ6ISU1 281 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 CYP4Z2PQ8N1L4 340 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 OR4N2Q8NGD1 307 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 RNFT2Q96EX2 444 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 VSTM2LQ96N03 204 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 MMP27Q9H306 513 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 IRAK4Q9NWZ3 460 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 SNTNA6NMZ2 147 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 GPX5O75715 221 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 CH25HO95992 272 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 IGKV1D-16P01601 117 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 GUSBP08236 651 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 SPTBP11277 2137 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 DRD5P21918 477 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 ETV5P41161 510 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 ETV1P50549 477 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 RAB40BQ12829 278 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 C14orf28Q4W4Y0 310 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 C3orf38Q5JPI3 329 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 METTL27Q8N6F8 245 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 AMER2Q8N7J2 671 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 HLA-CQ95604 372 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 NXF2Q9GZY0 626 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 FGF20Q9NP95 211 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 UCKL1Q9NWZ5 548 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 ETAA1Q9NY74 926 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 FBXL21Q9UKT6 434 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 DTX4Q9Y2E6 619 aa19.55■□□□□ 0.72
CCDC88B-208ENST00000492980 OR2W5A6NFC9 320 aa19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 SULT1C4O75897 302 aa19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 IL9P15248 144 aa19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 KHDRBS1Q07666 443 aaKnown RBP eCLIP19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 PDZK1Q5T2W1 519 aa19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 RNF113BQ8IZP6 322 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 PFN4Q8NHR9 129 aa19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 TMEM239Q8WW34 195 aa19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 CNOT9Q92600 299 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 MMABQ96EY8 250 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 DGAT2Q96PD7 388 aa19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 PDE7BQ9NP56 450 aa19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 WNT16Q9UBV4 365 aa19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 TMEM184BQ9Y519 407 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 A3GALT2U3KPV4 340 aa19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 TP53BP1Q12888 1972 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-208ENST00000492980 IRGMA1A4Y4 181 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms