RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 PSMD12O00232 456 aaPredicted RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 INPP4BO15327 924 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 MAGEB4O15481 346 aaPredicted RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 DLEU1O43261 78 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 SIGLEC6O43699 453 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 KLRC4O43908 158 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 CREG1O75629 220 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 RGS11O94810 467 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 PRAMEF1O95521 474 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ETHE1O95571 254 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ANP32DO95626 131 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 AP2A1O95782 977 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 NUDT17P0C025 328 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 OCM2P0CE71 109 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 PPIAL4FP0DN26 164 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 SNHG28P0DPA3 235 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 FAHP16930 419 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 PCK1P35558 622 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 IER3P46695 156 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 OR3A3P47888 321 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 NPBWR1P48145 328 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 GABRA4P48169 554 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 RFX3P48380 749 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 DUSP3P51452 185 aaPredicted RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 CCL11P51671 97 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 XKP51811 444 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 LIMK2P53671 638 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 MLLT10P55197 1068 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 RAG2P55895 527 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 CLDN18P56856 261 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 CTXN1P60606 82 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 RANP62826 216 aaKnown RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 POLR2LP62875 67 aaKnown RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ERVK-8P63133 956 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 TFAMQ00059 246 aaKnown RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 GUCY2DQ02846 1103 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 FZD5Q13467 585 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 RAB31Q13636 194 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 APOFQ13790 326 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 GK3PQ14409 553 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 HNF4GQ14541 408 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 GANABQ14697 944 aaKnown RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 RNPS1Q15287 305 aaKnown RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 INPP5JQ15735 1006 aaPredicted RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ATP6AP1Q15904 470 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 CCDC6Q16204 474 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 MEP1AQ16819 746 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ZNF658BQ4V348 819 aaPredicted RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 GCSAMLQ5JQS6 135 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 UTF1Q5T230 341 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 FAM69BQ5VUD6 431 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 LYSMD4Q5XG99 296 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ZNF770Q6IQ21 691 aaPredicted RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ACSM5Q6NUN0 579 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ULK3Q6PHR2 472 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 CYS1Q717R9 158 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 FAM214BQ7L5A3 538 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 DPY19L4Q7Z388 723 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 HDDC2Q7Z4H3 204 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 TMEM144Q7Z5S9 345 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 TGIF2LXQ8IUE1 241 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 LAS2Q8IYD9 372 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 LGI2Q8N0V4 545 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 NLGN4XQ8N0W4 816 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 TMEM132CQ8N3T6 1108 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 SPATA6LQ8N4H0 392 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 HSD17B11Q8NBQ5 300 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 SLC44A5Q8NCS7 719 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 SDR9C7Q8NEX9 313 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 OR7G2Q8NG99 324 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 SAP25Q8TEE9 199 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 PHF10Q8WUB8 498 aaKnown RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 APH1BQ8WW43 257 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 OVCA2Q8WZ82 227 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 TM9SF4Q92544 642 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 UFD1Q92890 307 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 PTH2Q96A98 100 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ANKRD9Q96BM1 317 aaPredicted RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 OR14A2Q96R54 314 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ACOX2Q99424 681 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 RBBP8Q99708 897 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 SYT15Q9BQS2 421 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ALG8Q9BVK2 526 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 GPR174Q9BXC1 333 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 BEX2Q9BXY8 128 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ANKHQ9HCJ1 492 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 KCNK9Q9NPC2 374 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 EQTNQ9NQ60 294 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 LYARQ9NX58 379 aaKnown RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 GSKIPQ9P0R6 139 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 PPP4R1LQ9P1A2 415 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 KIAA1456Q9P272 454 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 NKX1-2Q9UD57 310 aaPredicted RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 ZNF490Q9ULM2 529 aaPredicted RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 NDRG4Q9ULP0 352 aaKnown RBP3.9□□□□□ -1.78
BRCA1-220ENST00000492859 USP22Q9UPT9 525 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 MOKQ9UQ07 419 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 TNNQ9UQP3 1299 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 PPIAL4AQ9Y536 164 aa3.9□□□□□ -1.78
BRCA1-220ENST00000492859 OR51B4Q9Y5P0 310 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms