RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 GIN1Q9NXP7 522 aa22.34■■□□□ 1.17
UPF3A-209ENST00000492270 FAF1Q9UNN5 650 aaPredicted RBP22.34■■□□□ 1.17
UPF3A-209ENST00000492270 IGLV3-32A0A0A0MS00 114 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 NPIPA5A0A0B4J1W7 369 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 MBD3L4A6NDZ8 208 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-209ENST00000492270 MBD3L3A6NE82 208 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-209ENST00000492270 MBD3L5A6NJ08 208 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-209ENST00000492270 C9JVG2 144 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 NPIPA7E9PJI5 369 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 RNASET2O00584 256 aaKnown RBP22.33■■□□□ 1.17
UPF3A-209ENST00000492270 NGFRP08138 427 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 NPIPA8P0DM63 369 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 BMP5P22003 454 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 RNF144AP50876 292 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-209ENST00000492270 ZNF136P52737 540 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 RCAN2Q14206 197 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 GANABQ14697 944 aaKnown RBP22.33■■□□□ 1.17
UPF3A-209ENST00000492270 SF3B4Q15427 424 aaKnown RBP eCLIP22.33■■□□□ 1.174e-10■□□□□ 10.5
UPF3A-209ENST00000492270 TTMPQ5BVD1 217 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 POMZP3Q6PJE2 187 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 MAVSQ7Z434 540 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 GDF7Q7Z4P5 450 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 OR4A15Q8NGL6 344 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 MBD3L2Q8NHZ7 208 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-209ENST00000492270 OR7D2Q96RA2 312 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 PTGES2Q9H7Z7 377 aa22.33■■□□□ 1.17
UPF3A-209ENST00000492270 RNF103-CHMP3A0A140T963 221 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 CLCA1A8K7I4 914 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 SHISA8B8ZZ34 492 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 NDUFB5O43674 189 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 IL2RAP01589 272 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 UFM1P61960 85 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 CD226Q15762 336 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 SLC25A35Q3KQZ1 300 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 DCST2Q5T1A1 773 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 ARSKQ6UWY0 536 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 ADGRE4PQ86SQ3 457 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 UBQLNLQ8IYU4 475 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 ZNF75CPQ92670 426 aaPredicted RBP22.32■■□□□ 1.16
UPF3A-209ENST00000492270 KLHDC3Q9BQ90 382 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 CALHM2Q9HA72 323 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 UBQLN4Q9NRR5 601 aa22.32■■□□□ 1.16
UPF3A-209ENST00000492270 TACC2O95359 2948 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 CSMD1Q96PZ7 3565 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 OR2M5A3KFT3 312 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 TRPC5OSA6NMA1 111 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 CPSF4O95639 269 aaKnown RBP22.31■■□□□ 1.16
UPF3A-209ENST00000492270 IL12AP29459 219 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 LCN1P31025 176 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 AGFG1P52594 562 aaKnown RBP22.31■■□□□ 1.16
UPF3A-209ENST00000492270 CASP9P55211 416 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 FAM174BQ3ZCQ3 159 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 SLC9B1Q4ZJI4 515 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 C6orf120Q7Z4R8 191 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 SH3YL1Q96HL8 342 aaPredicted RBP22.31■■□□□ 1.16
UPF3A-209ENST00000492270 ATP6V1G3Q96LB4 118 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 CLCF1Q9UBD9 225 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 VDAC3Q9Y277 283 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 ZNF337Q9Y3M9 751 aa22.31■■□□□ 1.16
UPF3A-209ENST00000492270 HEATR5AQ86XA9 2040 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 PDZD2O15018 2839 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 E9PBE3 544 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 H0YC42 278 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 SCDO00767 359 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 KRT16P08779 473 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 CLNS1AP54105 237 aaKnown RBP22.3■■□□□ 1.16
UPF3A-209ENST00000492270 TPD52P55327 224 aaPredicted RBP22.3■■□□□ 1.16
UPF3A-209ENST00000492270 DLX5P56178 289 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 SPATA19Q7Z5L4 167 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 SLC35G5Q96KT7 338 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 MARK4Q96L34 752 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 NPAS1Q99742 590 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 GPR45Q9Y5Y3 372 aa22.3■■□□□ 1.16
UPF3A-209ENST00000492270 PRSS51A0A1B0GVH4 220 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 H3BML4 177 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 DVL2O14641 736 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 KLF11O14901 512 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 PEPDP12955 493 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 HPGDP15428 266 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 POU3F2P20265 443 aaPredicted RBP22.29■■□□□ 1.16
UPF3A-209ENST00000492270 ATP6V1C1P21283 382 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 MATN1P21941 496 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 DGKQP52824 942 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 CLDN15P56746 228 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 FOXF2Q12947 444 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 SNTB1Q13884 538 aaKnown RBP22.29■■□□□ 1.16
UPF3A-209ENST00000492270 DPY19L1Q2PZI1 675 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 DDX59Q5T1V6 619 aaKnown RBP eCLIP22.29■■□□□ 1.16
UPF3A-209ENST00000492270 NXNQ6DKJ4 435 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 BHLHB9Q6PI77 547 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 OLIG3Q7RTU3 272 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 DMRTC2Q8IXT2 367 aaPredicted RBP22.29■■□□□ 1.16
UPF3A-209ENST00000492270 MAELQ96JY0 434 aaKnown RBP22.29■■□□□ 1.16
UPF3A-209ENST00000492270 PCDHGB4Q9UN71 923 aa22.29■■□□□ 1.16
UPF3A-209ENST00000492270 A0A1W2PQD3 144 aa22.28■■□□□ 1.16
UPF3A-209ENST00000492270 SLCO1B7G3V0H7 640 aa22.28■■□□□ 1.16
UPF3A-209ENST00000492270 ZNF195O14628 629 aa22.28■■□□□ 1.16
UPF3A-209ENST00000492270 OIP5O43482 229 aa22.28■■□□□ 1.16
UPF3A-209ENST00000492270 C1QCP02747 245 aa22.28■■□□□ 1.16
UPF3A-209ENST00000492270 S100A3P33764 101 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms