RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PM20D2Q8IYS1 436 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 LRRC34Q8IZ02 419 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 RELL2Q8NC24 303 aaPredicted RBP16.41■□□□□ 0.22
COL9A3-214ENST00000490398 OR4A15Q8NGL6 344 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 ADAMTS15Q8TE58 950 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 TESCQ96BS2 214 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 C1GALT1C1Q96EU7 318 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 MAELQ96JY0 434 aaKnown RBP16.41■□□□□ 0.22
COL9A3-214ENST00000490398 OR7D2Q96RA2 312 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 STACQ99469 402 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 TRIM8Q9BZR9 551 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 ENKD1Q9H0I2 346 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 NEUROD4Q9HD90 331 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 SLCO1B3Q9NPD5 702 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 RNF103-CHMP3A0A140T963 221 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 KLF11O14901 512 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 IGFBP2P18065 325 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 ZNF136P52737 540 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 FAM174BQ3ZCQ3 159 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 DCST2Q5T1A1 773 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 NXNQ6DKJ4 435 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 SPATA19Q7Z5L4 167 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 KIRREL3Q8IZU9 778 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 SH3YL1Q96HL8 342 aaPredicted RBP16.4■□□□□ 0.22
COL9A3-214ENST00000490398 INPP5KQ9BT40 448 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 KCNJ16Q9NPI9 418 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 SDHAF3Q9NRP4 125 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 FAF1Q9UNN5 650 aaPredicted RBP16.4■□□□□ 0.22
COL9A3-214ENST00000490398 ZNF337Q9Y3M9 751 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 PCNX3Q9H6A9 2034 aa16.4■□□□□ 0.22
COL9A3-214ENST00000490398 NUP214P35658 2090 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-214ENST00000490398 PRSS51A0A1B0GVH4 220 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 OR2M5A3KFT3 312 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 CD8B2A6NJW9 211 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 E9PBE3 544 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 H0Y3Z8 333 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 NDUFB5O43674 189 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 NGFRP08138 427 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 ZNF708P17019 499 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 CDKN2CP42773 168 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 CLK3P49761 638 aaKnown RBP16.39■□□□□ 0.21
COL9A3-214ENST00000490398 SUCLG1P53597 346 aaKnown RBP16.39■□□□□ 0.21
COL9A3-214ENST00000490398 DLX5P56178 289 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 C17orf67Q0P5P2 114 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 FOXF2Q12947 444 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 TMEM44Q2T9K0 475 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 RAET1LQ5VY80 246 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 MEX3BQ6ZN04 569 aaKnown RBP16.39■□□□□ 0.21
COL9A3-214ENST00000490398 HDXQ7Z353 690 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 ADGRE4PQ86SQ3 457 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 LACC1Q8IV20 430 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 UBQLNLQ8IYU4 475 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 PIWIL2Q8TC59 973 aaKnown RBP16.39■□□□□ 0.21
COL9A3-214ENST00000490398 ZPLD1Q8TCW7 415 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 TREX2Q9BQ50 279 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-214ENST00000490398 PKDREJQ9NTG1 2253 aa16.39■□□□□ 0.21
COL9A3-214ENST00000490398 CENPVL1A0A0U1RR11 272 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 MBD3L4A6NDZ8 208 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-214ENST00000490398 MBD3L3A6NE82 208 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-214ENST00000490398 MBD3L5A6NJ08 208 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-214ENST00000490398 TRPC5OSA6NMA1 111 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 CLCA1A8K7I4 914 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 MATN1P21941 496 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 CHMP24386 653 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 MSX1P28360 303 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 TIMP3P35625 211 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 SNTB1Q13884 538 aaKnown RBP16.38■□□□□ 0.21
COL9A3-214ENST00000490398 NDUFAF6Q330K2 333 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 AAGABQ6PD74 315 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 MBD3L2Q8NHZ7 208 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-214ENST00000490398 MOAP1Q96BY2 351 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 ZNF524Q96C55 264 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 SLC35G5Q96KT7 338 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 SDF2Q99470 211 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 SPOCK3Q9BQ16 436 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 OR51I1Q9H343 314 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 UBQLN4Q9NRR5 601 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 KCNE5Q9UJ90 142 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 VDAC3Q9Y277 283 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 PDZD2O15018 2839 aa16.38■□□□□ 0.21
COL9A3-214ENST00000490398 PRAMEF27A3QJZ7 478 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 HSPB2A8KAH6 182 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 NPIPB9F8W1W9 429 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 SLCO1B7G3V0H7 640 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 FCMRO60667 390 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 TGM6O95932 706 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 GSNP06396 782 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 BMP5P22003 454 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 S100A3P33764 101 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 GCKP35557 465 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 CLNS1AP54105 237 aaKnown RBP16.37■□□□□ 0.21
COL9A3-214ENST00000490398 CLDN20P56880 219 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 KRTAP10-9P60411 292 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 HSPB2Q16082 182 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 ANXA8L1Q5VT79 327 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 SAXO2Q658L1 398 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 TNFAIP8L2Q6P589 184 aaPredicted RBP16.37■□□□□ 0.21
COL9A3-214ENST00000490398 CBLN3Q6UW01 205 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 ENPP6Q6UWR7 440 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 LSRQ86X29 649 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms