RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 WFDC11Q8NEX6 87 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 JADE3Q92613 823 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 HOXB13Q92826 284 aaPredicted RBP19.39■□□□□ 0.69
USP40-215ENST00000484528 WFIKKN1Q96NZ8 548 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 NPAS1Q99742 590 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 RNF122Q9H9V4 155 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 PRR14LQ5THK1 2151 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 EIF1AYO14602 144 aaKnown RBP19.38■□□□□ 0.69
USP40-215ENST00000484528 SIAH2O43255 324 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 EMC8O43402 210 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 NDUFB5O43674 189 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 AQP8O94778 261 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 POU2F1P14859 743 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 TMEM44Q2T9K0 475 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 ARL13AQ5H913 290 aaPredicted RBP19.38■□□□□ 0.69
USP40-215ENST00000484528 CCNJQ5T5M9 372 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 RNF165Q6ZSG1 346 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 ZNF550Q7Z398 422 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 METTL25Q8N6Q8 603 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 COX18Q8N8Q8 333 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 BANPQ8N9N5 519 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 CHMP6Q96FZ7 201 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 SH3YL1Q96HL8 342 aaPredicted RBP19.38■□□□□ 0.69
USP40-215ENST00000484528 KLHDC3Q9BQ90 382 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 MED18Q9BUE0 208 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 GSX1Q9H4S2 264 aaPredicted RBP19.38■□□□□ 0.69
USP40-215ENST00000484528 ACSS1Q9NUB1 689 aaPredicted RBP19.38■□□□□ 0.69
USP40-215ENST00000484528 MKS1Q9NXB0 559 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 TRAF6Q9Y4K3 522 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 AP4B1Q9Y6B7 739 aa19.38■□□□□ 0.69
USP40-215ENST00000484528 ALG1L2C9J202 215 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 CTIFO43310 598 aaKnown RBP19.37■□□□□ 0.69
USP40-215ENST00000484528 KCNK2O95069 426 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 CD53P19397 219 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 HPCAL1P37235 193 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 ASMTP46597 345 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 EIF1AXP47813 144 aaKnown RBP19.37■□□□□ 0.69
USP40-215ENST00000484528 RNF144AP50876 292 aaPredicted RBP19.37■□□□□ 0.69
USP40-215ENST00000484528 UGT3A2Q3SY77 523 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 GLYR1Q49A26 553 aaPredicted RBP19.37■□□□□ 0.69
USP40-215ENST00000484528 TRABD2AQ86V40 505 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 ZNF610Q8N9Z0 462 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 OR7A2PQ8NGA2 310 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 FAM120BQ96EK7 910 aaKnown RBP19.37■□□□□ 0.69
USP40-215ENST00000484528 TMEM185BQ9H7F4 350 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 ANKZF1Q9H8Y5 726 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 L2HGDHQ9H9P8 463 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 NTMQ9P121 344 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 CLEC4AQ9UMR7 237 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 TMED5Q9Y3A6 229 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 DSCAMO60469 2012 aa19.37■□□□□ 0.69
USP40-215ENST00000484528 SCAMP2O15127 329 aaKnown RBP19.36■□□□□ 0.69
USP40-215ENST00000484528 NPHS1O60500 1241 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 CGAP01215 116 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 ALOX5P09917 674 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 TBXA2RP21731 343 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 SLC6A8P48029 635 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 OR6Y1Q8NGX8 325 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 NUDT8Q8WV74 236 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 MTERF3Q96E29 417 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 PIK3IP1Q96FE7 263 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 ZC3HAV1LQ96H79 300 aaKnown RBP19.36■□□□□ 0.69
USP40-215ENST00000484528 C1orf50Q9BV19 199 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 PRRG4Q9BZD6 226 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 DLL4Q9NR61 685 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 SIRT3Q9NTG7 399 aaPredicted RBP19.36■□□□□ 0.69
USP40-215ENST00000484528 ZCCHC3Q9NUD5 404 aaKnown RBP19.36■□□□□ 0.69
USP40-215ENST00000484528 PROCRQ9UNN8 238 aa19.36■□□□□ 0.69
USP40-215ENST00000484528 UQCRHLA0A096LP55 91 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 A0A1W2PRB8 838 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 DEFB108AA8MXU0 73 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 PEX11AO75192 247 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 SKAP2O75563 359 aaPredicted RBP19.35■□□□□ 0.69
USP40-215ENST00000484528 FGF4P08620 206 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 HPGDP15428 266 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 ARRB2P32121 409 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 UGT2B10P36537 528 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 LASP1Q14847 261 aaKnown RBP19.35■□□□□ 0.69
USP40-215ENST00000484528 PTGR1Q14914 329 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 GUSBP1Q15486 140 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.35■□□□□ 0.69
USP40-215ENST00000484528 EXOC3L2Q2M3D2 409 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 ANKRD34AQ69YU3 496 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 FAM214BQ7L5A3 538 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 FAM110BQ8TC76 370 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 CDS1Q92903 461 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 POM121Q96HA1 1249 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 RNF145Q96MT1 663 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 SLC39A3Q9BRY0 314 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 NEUROD4Q9HD90 331 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 MED17Q9NVC6 651 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 SNX8Q9Y5X2 465 aa19.35■□□□□ 0.69
USP40-215ENST00000484528 NPIPA5A0A0B4J1W7 369 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 TMEM114B3SHH9 223 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 NPIPA7E9PJI5 369 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 CXCL13O43927 109 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 SLU7O95391 586 aaKnown RBP19.34■□□□□ 0.69
USP40-215ENST00000484528 HMGN2P05204 90 aaKnown RBP19.34■□□□□ 0.69
USP40-215ENST00000484528 NGFRP08138 427 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 NPIPA8P0DM63 369 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms